Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1683 ATGTTTCCTGTCTCCATGTCTAATTATGACCGGATTTCAGAGCTGATATGGGAGAATGGCCAGCTATCCATCCATGGGCTTGGTGGGCTTCAACCTACTAACCCTACTCAGGAAAAGCCCATATCAAGTGGGGCCCACGACACATTGGAGTCTATCGTTCAACATGCCACGTTCCAACGTTATCAACCGTCAAAATTCACTAGGGAAGAAGGCCATGCCCCTACTAGTAATAGTAAAAACAACAACTCCATTGGTGCACCCTATTATGGTGGTGAGGTTCAAGGTGTGCTATCCTCGACGAGGAAAAGAACATGGTCCAATGCTAACAACAGCATGTTGGAAGAATGTGACATCCTTAGTGGTTGTGCTAGTGCTGGTGCTACCTTTTGTAGGGACAATGATACAACCATGATGACATGGGTCTCTCTTGATCAGTCTGGTCGTAGCTTAAAGACTATGGAGGAAGATTCTGCTTGTCACTGTGGATCGGAAATTCGAGACAACCAAGATGACAGAGACAGCAAAGCAGAAGTAGGCCAAAGCAACTCAAAAAGAAGAAGTCGAACTGCTGCCATTCATAACCAGTCTGAGCGGAAAAGAAGAGATAGAATTAATCAGAAGATGAAAGCCTTGCAGAGGTTGGTGCCTAATGCAAATAAGACAGATAAAGCTTCAATGTTAGATGAGGTGATAAACTACTTAAAGCAACTGCAAGCACAGATCCAAATGATGAACATGACAAGCATGCCCCAAATGATGGTGCCTTTGGCCATGCAACAGCAGCTTCAGATGTCAATGCTAGCAAGAATGGGTGTTGCTGGGCTTGGCATGGGAATGGGCATGAACATGGCAGCAGCAGCTCAAACAGCAGGTGGCCCAATTAGGTCACTCCCCCAATTCATTCAACCAACAACAACTACAGTTTGTGCTCCACCACCTGCCACTGCCCCTGTGTTTGTTGCCCCTTCCTTCATGATGCCACCTTCCATGATCCAAGCACCTCCAAAGCCCCAACAATTACCTGCATCCTCAGCCTCCATTGCCTCAATTCATTTGCCTCATCCATATAGTGCTGCTGGTCTCACCCAACCAATTAACATGGATATCCTCAGCAACATGGCAGCACTTTATCAACAACAGATAAGTCAAAACAATCATCAGGCCCTGAGCAGCAGCATGCCCCAACCACACCATGAGCAAGGCCGTTGA 1209 0.4665 MFPVSMSNYDRISELIWENGQLSIHGLGGLQPTNPTQEKPISSGAHDTLESIVQHATFQRYQPSKFTREEGHAPTSNSKNNNSIGAPYYGGEVQGVLSSTRKRTWSNANNSMLEECDILSGCASAGATFCRDNDTTMMTWVSLDQSGRSLKTMEEDSACHCGSEIRDNQDDRDSKAEVGQSNSKRRSRTAAIHNQSERKRRDRINQKMKALQRLVPNANKTDKASMLDEVINYLKQLQAQIQMMNMTSMPQMMVPLAMQQQLQMSMLARMGVAGLGMGMGMNMAAAAQTAGGPIRSLPQFIQPTTTTVCAPPPATAPVFVAPSFMMPPSMIQAPPKPQQLPASSASIASIHLPHPYSAAGLTQPINMDILSNMAALYQQQISQNNHQALSSSMPQPHHEQGR* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1683 402 Coils Coil 194 214 - -
Gso6g1683 402 MobiDBLite consensus disorder prediction 60 88 - -
Gso6g1683 402 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 188 237 IPR011598 GO:0046983
Gso6g1683 402 MobiDBLite consensus disorder prediction 162 182 - -
Gso6g1683 402 CDD bHLH_AtPIF_like 188 250 - -
Gso6g1683 402 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 248 IPR036638 GO:0046983
Gso6g1683 402 SMART finulus 194 243 IPR011598 GO:0046983
Gso6g1683 402 MobiDBLite consensus disorder prediction 162 202 - -
Gso6g1683 402 Gene3D - 182 248 IPR036638 GO:0046983
Gso6g1683 402 Pfam Helix-loop-helix DNA-binding domain 193 238 IPR011598 GO:0046983
Gso6g1683 402 PANTHER TRANSCRIPTION FACTOR PIF7 9 395 - -
Gso6g1683 402 MobiDBLite consensus disorder prediction 60 87 - -
Gso6g1683 402 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 9 395 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1683 Gso-Chr6 18129232 18135363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1683 12 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 37.643 4.89e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso6g1683 HLH 5.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1683 - - gmx:102667566 720.694