Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1676 ATGCCCTTCACTTCTTCAACTCGGCCTCCAACCACAACCACTACTCCTACACACCCTTCTACTATGCTGCCATCACCGACCTCTTGCTCTCCTACTCCTTCTCTGTCACTCCAACTGACTCTCCGACAACCTCGTCAGCATGTTCATCAATGCTCTCGGCCACCGTGGCGATGTCAGAGGCGCCATTCATTGGTTCCACAAAGCCAATACCTTCACAAAGGATGCTGTGTGTATTCCTGCAATGCCATATTGGGTGTCCTCGTGAGGGCCAACTATGTCAACATTGCCAAGGCCATCTATGATCAAGTTCTCGCAGAAGCTATATTGGAACTTGATGTTTACACTTATACTACCATGATTTGTGGGTTATGCAAAGTGGGCATGGTCGAAAGTGCACGCAAGGTGTTTGAGGAAATTCCCTGCAAACCTAACATGGTTACTTACAACACGTTGATCCATGGGTTTTGTAAGAAAGGTCATATGGAGGGTGCCACGAGGCTTTTTGACAGATTGGTTGAGAATAAGAGTTGCAAGCCGGATGTGGAGTGTTTTACCACTTTGATTGAAGGGTATTCGAAGAGAAGTGATTTCCGAGATGCGCTTGAGTGCTTGAAGGAGATGATGGAAGGTGTTCCCTGA 639 0.4726 MPFTSSTRPPTTTTTPTHPSTMLPSPTSCSPTPSLSLQLTLRQPRQHVHQCSRPPWRCQRRHSLVPQSQYLHKGCCVYSCNAILGVLVRANYVNIAKAIYDQVLAEAILELDVYTYTTMICGLCKVGMVESARKVFEEIPCKPNMVTYNTLIHGFCKKGHMEGATRLFDRLVENKSCKPDVECFTTLIEGYSKRSDFRDALECLKEMMEGVP* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1676 212 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 179 IPR002885 -
Gso6g1676 212 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 70 209 - -
Gso6g1676 212 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 142 IPR002885 -
Gso6g1676 212 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 70 209 - -
Gso6g1676 212 TIGRFAM PPR: pentatricopeptide repeat domain 114 139 IPR002885 -
Gso6g1676 212 TIGRFAM PPR: pentatricopeptide repeat domain 146 181 IPR002885 -
Gso6g1676 212 TIGRFAM PPR: pentatricopeptide repeat domain 183 209 IPR002885 -
Gso6g1676 212 Gene3D Tetratricopeptide repeat domain 72 138 IPR011990 GO:0005515
Gso6g1676 212 Gene3D Tetratricopeptide repeat domain 139 210 IPR011990 GO:0005515
Gso6g1676 212 Pfam PPR repeat family 143 193 IPR002885 -
Gso6g1676 212 Pfam PPR repeat 109 138 IPR002885 -
Gso6g1676 212 MobiDBLite consensus disorder prediction 1 33 - -
Gso6g1676 212 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 210 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1676 Gso-Chr6 18052572 18053210 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1676 60 210 Glycosyltransferase AT1G05670 32.468 9.79e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1676 - - gmx:113001859 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1528 4 44248849 44249298 Gso6g1676 6 18052572 18053210 GST