Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1671 ATGAGTTTTGTTGCTCATAGAAGAAAAAAAACACATAGCACAAGAGAAGGACCATCATCATTAATGTCAGAGCAGGAAACCGATTCATGGGGCTTCCTGTTTGTCTGTTTGTTGATCCTTTTCTCAGGTAAACTAGTTGTTGGGGATTCATTGGAAACTGACGCACGAGTTTTGCTGAAGCTGAAATCATATTTGCAAACACAAACTCTTGCAAATAAAGGAGGGTACACAAGCTGGAACAAGAACAGTTCAAATCCTTGTGATTGGTCAGGAATCAAGTGCAGCAGCATCTTGAATGGAACAACAAGGAGGGTTGTGAAAGTTGATATCTCTTACAGTGACATATATGGTAACATATTCGAAAATTTCTCTCAACTCACTGAACTCACGCACCTTGATATTTCTTGGAACTCTCTCTCTGGGGGAATTCCTGAGGATTTGAGGAGGAGCCACAAGCTTGTGTATCTTAATCTCTCTCATAATACTCTTAAGGGGGAGTTGAATTTGAAGGGTTTGACAAAGTTGCAAACAGTGGACTTGTCAGTTAATAGATTTGTTGGGGGACTTGGGTTGAGTTTCCCTGCCATTTGTGATAGTTTGGTGACTTTGAATGTTTCAGACAATCACTTGAATGGTGGAATTGATGGCTTCTTTGATCAATGCTTGAAGTTGCAGCACTTGGATTTGAGCACCAACCATCTGAATGGGACCCTATGGACTGGATTTTCCAGGCTGAGAGAGTTTTCAATCTCAGAGAATTTTCTCACAGGGGTTGTTCCTTCCAAGGCTTTTCCAATCAATTGTAGCCTTGAAAAACTTGACCTTTCTGTTAATGAATTTGACGGTAAGCCCCCAAAGGAGGTTGCTAACTGCAAGAATTTGTTGGTTCTCAACCTTTCTGGTAACAATTTTACTGGAGATATTCCCAGTGAAATTGGTTCCATTTCTGGTCTTGATGCATTGTTCTTGGGGAACAACACTTTCTCGAGGGATATCCCAGAGACCCTTTTGAACTTGACCCATTTGTTCATCTTGGATTTAAGCAGGAATAAATTTGGTGGGGAGGTGCAGGAGATTTTTGGGAAATTCAAGCAACTGAAGTTTCTTGTGCTGCACTCAAATTCCTACACTGGAGGGTTGAACACATCAGGCATTTTTACATTGACAAACCTTAGCCGTTTGGACATAAGCTTCAACAACTTTTCAGGTCCATTACCTGTTGAAATCTCACAAATGTCTGGACTTACCTTCTTAACCTTAACCTACAACCAGTTCTCTGGGCCTATTCCATCTGAATTGGGAAAGTTGACTCGCCTTATGGCACTTGATCTTGCCTTCAACAATTTCAGTGGACCAATCCCACCAAGCCTTGGAAACTTGAGTACTCTCCTATGGCTAACCCTTTCAGATAATTTGTTATCAGGAGAAATCCCGCCAGAGTTGGGAAACTGCTCAAGCATGTTATGGCTGAACCTTGCAAACAACAAACTCTCGGGAAAATTTCCTTCCGAACTAACGAGAATCGGAAGGAATGCAAGGGCCACATTTGAAGCAAACAATAGAAACCTTGGGGGAGTTGTTGCTGGCAATAGTGAGTGCTTAGCAATGAGGAGATGGATACCTGCTGATTACCCTCCATTCAGCTTTGTGTATAACATCTTAACAAGGAAGAATTGTAGGGCCCTTTGGGATAGGTTGCTCAAAGGACATAATATTTTTCCCATGTGTTCATCTGTGCCCTCTTCTAAACCTTCACACATAGCAGGGTATGTTCAGCTAAGTGGGAACCAAATGAGTGGTGAAATCCCTTCAGAAATTGGGAACATGGTGAACTTCAGCATGTTGCATTTTGGGGATAACAAGTTCACTGGGAAATTCCCTCCAGAGATGGTAGGTTTGCCACTTGTAGTCTTGAACATGACCAGAAACAATTTTTCTGGTGAACTTCCAAGTAATATTGGCAACATGAAGTGTCTACAGGATCTGGATTTGTCTTGTAACAATTTCTCCGGAGCATTTCCCGTAACTTTGGCACGCTTGGATGAGCTTAGCATGTTCAACATCTCATATAATCCTCTCATATCTGGTGCAGTCCCACCAGCTGGACACTTACTCACTTTTGACAAGGATTCATATTTGGGTGACCCCCTTTTGAACCTGTTCTTTAACATCACTGATGATAGAAATAGGACTTTACCCAAAGTCTTGAAAAATCCCACAAAATGGTCTTTGGTTTTGGCTCTAGCACTTGCTATCATGGTCTTTGGACTTCTTTTCCTGGTGATATGTTTCTTGGTGAAAAGTCCAAAGGTGGAACCAGGATACCTCATGAAGAATAATACAAAGAAGCAAGCACATGATTCAGGCAGCACCGGATCCTCAGCAGGGTATTCCGATACTGTCAAGATATTCCACCTAAACAAGACAGTTTTCACACATGCTGACATCTTAAAAGCAACCTCCAACTTCACAGAGGAGAGAATCATAGGAAAGGGTGGCTATGGAACAGTCTATAGAGGGATGTTTCCAGATGGGAGAGAAGTGGCAGTGAAGAAGCTTCAAAGGGAAGGAACTGAGGGCGAAAAAGAATTCAGAGCCGAAATGAAGGTTCTGAGTGGTCTTGGATTTAACTGGCCTCATCCAAACCTTGTCACACTCTATGGTTGGTGCCTCTATGGTTCACAGAAGATACTAGTCTATGAGTACATAGGAGGTGGAAGCTTGGAGGAACTTGTGACTGATACAAAAAGGATGGCGTGGAAGAGGCGCCTAGAAGTGGCAATCGATGTGGCTAGAGCACTAGTCTATTTACACCATGAGTGCTACCCTTCTATTGTGCATAGAGATGTGAAGGCTAGTAATGTGTTGCTAGACAAAGATGGCAAGGCCAAGGTCACAGATTTTGGACTTGCTAGAATTGTTAATGTTGGAGATAGTCATGTGAGCACTATAGTGGCTGGCACAGTTGGGTATGTTGCACCAGAATATGGACAAACATGGCAAGCCACTACAAAAGGGGATGTGTATAGTTTTGGAGTGTTGGTCATGGAGCTAGCAACAGCAAGAAGAGCAGTGGATGGAGGTGAAGAGTGCTTGGTGGAATGGACTCGGCGCGTTATGATGATGAGTTCTGGAAGACAAGGGTTGGATCAATATGTGCCAGTTTTGTTGAAGGGATGTGGAGTAGTGGAAGGGGCAAAGGAGATGAGTGAATTGCTCCAAGTTGGAGTGAAGTGCACACATGATGCACCACAGGCTAGGCCTAACATGAAGGAGGTTCTAGCTATGCTGATTAGGATATACAATCCCACTGGGGACTCAAATGGTGGACACATTGTGTAG 3342 0.4297 MSFVAHRRKKTHSTREGPSSLMSEQETDSWGFLFVCLLILFSGKLVVGDSLETDARVLLKLKSYLQTQTLANKGGYTSWNKNSSNPCDWSGIKCSSILNGTTRRVVKVDISYSDIYGNIFENFSQLTELTHLDISWNSLSGGIPEDLRRSHKLVYLNLSHNTLKGELNLKGLTKLQTVDLSVNRFVGGLGLSFPAICDSLVTLNVSDNHLNGGIDGFFDQCLKLQHLDLSTNHLNGTLWTGFSRLREFSISENFLTGVVPSKAFPINCSLEKLDLSVNEFDGKPPKEVANCKNLLVLNLSGNNFTGDIPSEIGSISGLDALFLGNNTFSRDIPETLLNLTHLFILDLSRNKFGGEVQEIFGKFKQLKFLVLHSNSYTGGLNTSGIFTLTNLSRLDISFNNFSGPLPVEISQMSGLTFLTLTYNQFSGPIPSELGKLTRLMALDLAFNNFSGPIPPSLGNLSTLLWLTLSDNLLSGEIPPELGNCSSMLWLNLANNKLSGKFPSELTRIGRNARATFEANNRNLGGVVAGNSECLAMRRWIPADYPPFSFVYNILTRKNCRALWDRLLKGHNIFPMCSSVPSSKPSHIAGYVQLSGNQMSGEIPSEIGNMVNFSMLHFGDNKFTGKFPPEMVGLPLVVLNMTRNNFSGELPSNIGNMKCLQDLDLSCNNFSGAFPVTLARLDELSMFNISYNPLISGAVPPAGHLLTFDKDSYLGDPLLNLFFNITDDRNRTLPKVLKNPTKWSLVLALALAIMVFGLLFLVICFLVKSPKVEPGYLMKNNTKKQAHDSGSTGSSAGYSDTVKIFHLNKTVFTHADILKATSNFTEERIIGKGGYGTVYRGMFPDGREVAVKKLQREGTEGEKEFRAEMKVLSGLGFNWPHPNLVTLYGWCLYGSQKILVYEYIGGGSLEELVTDTKRMAWKRRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKDGKAKVTDFGLARIVNVGDSHVSTIVAGTVGYVAPEYGQTWQATTKGDVYSFGVLVMELATARRAVDGGEECLVEWTRRVMMMSSGRQGLDQYVPVLLKGCGVVEGAKEMSELLQVGVKCTHDAPQARPNMKEVLAMLIRIYNPTGDSNGGHIV* 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1671 1113 SUPERFAMILY L domain-like 73 333 - -
Gso6g1671 1113 Gene3D Ribonuclease Inhibitor 197 265 IPR032675 -
Gso6g1671 1113 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 23 1104 - -
Gso6g1671 1113 MobiDBLite consensus disorder prediction 1 22 - -
Gso6g1671 1113 ProSiteProfiles Protein kinase domain profile. 823 1100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1671 1113 CDD STKc_IRAK 829 1100 - -
Gso6g1671 1113 Gene3D Ribonuclease Inhibitor 584 721 IPR032675 -
Gso6g1671 1113 ProSitePatterns Protein kinases ATP-binding region signature. 829 852 IPR017441 GO:0005524
Gso6g1671 1113 Pfam Leucine rich repeat N-terminal domain 52 95 IPR013210 -
Gso6g1671 1113 SMART serkin_6 823 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1671 1113 Gene3D Ribonuclease Inhibitor 356 531 IPR032675 -
Gso6g1671 1113 Pfam Protein kinase domain 823 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1671 1113 Gene3D Ribonuclease Inhibitor 266 355 IPR032675 -
Gso6g1671 1113 ProSitePatterns Serine/Threonine protein kinases active-site signature. 945 957 IPR008271 GO:0004672|GO:0006468
Gso6g1671 1113 Gene3D Transferase(Phosphotransferase) domain 1 904 1108 - -
Gso6g1671 1113 Gene3D Phosphorylase Kinase; domain 1 787 902 - -
Gso6g1671 1113 ProSiteProfiles Leucine-rich repeat profile. 152 173 IPR001611 GO:0005515
Gso6g1671 1113 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 23 1104 - -
Gso6g1671 1113 SUPERFAMILY Protein kinase-like (PK-like) 803 1098 IPR011009 -
Gso6g1671 1113 SUPERFAMILY L domain-like 241 695 - -
Gso6g1671 1113 Pfam Leucine Rich Repeat 129 147 IPR001611 GO:0005515
Gso6g1671 1113 Gene3D Ribonuclease Inhibitor 50 196 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1671 Gso-Chr6 17992542 17996599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1671 87 1100 Receptor kinase-like Gene Family AT5G07280 31.079 4.99e-140 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Gso6g1671 Pkinase 7.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1671 - - gmx:100781769 2226.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1671 6 17992542 17996599 Gso6g1671 6 17992542 17996599 ECH
Gso4g1384 4 40666842 40670956 Gso6g1671 6 17992542 17996599 GST