Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1666 ATGGGGTGCGTGAGCTCGAAGCAAGCGGTGTCGGTGACGCCGGCGATTGACCACTCCGGCGCGTTCCGGAGCAATGCGGGTGGTCTGGCCGAGCCGGAGAAGAAGAGGAGCAAGAAGAGGACCGAGTCTGGTGGAGCGAGTCAGAGCGAGGTAGGTGAGTCGGGGAGAACGAGTTCCAATTGCGACTCGCTCAGCTTCAGGCTGGGGAACCTCCACAAGTACGTGCAGGGCGAACACGTCGCAGCCGGCTGGCCCGCCTGGCTCAGCGCCGTCGCCGGCGAAGCCATTCACGGCTGGGTCCCCCTCCGCGCAGACGCCTTCGAAAAACTCGAGAAGATAGGGCAGGGGACGTACAGCAGTGTGTTTAGGGCGAGGGAGCTTGAGACGGGGAAGATAGTGGCATTGAAGAAGGTGCGGTTCGACAATTTCGAACCGGAGAGTGTGCGGTTCATGGCGCGTGAGATACTGATCCTGCGACGGCTTGATCACCCCAATATCATAAAGCTTGAGGGTTTGATTACTTCGAGGTTGTCGTGTAGCATTTACCTCGTGTTTGAGTACATGGAGCATGACATTACGGGGCTCTTGTCTTCCCCTGATATCAAGTTCACTGAACCGCAGATTAAGTGCTACATGAAGCAGTTATTGGTTGGTCTTGAGCACTGTCACTTGCGAGGAGTGATGCATAGGGACATTAAGGGGTCGAATCTTTTGGTGAATAATGAAGGGGTTTTGAAGGTGGCAGATTTTGGGTTGGCAAATTTTGTCAATCCTGGGCACAGGCAACCTCTGACTAGTCGTGTTGTCACCTTGTGGTACCGGCCGCCGGAGCTTTTGCTCGGTTCGACAGATTATGGTCCAGCTGTTGATCTCTGGAGTGTTGGCTGTGTCTTTGCGGAGCTGCTTGTTGGAAAGCCTATACTTCAGGGGAGGACAGAGGTTGAACAACTGCACAAAATTTTCAAGCTCTGTGGCTCCCCACCGGATGAATACTGGAAAAAGTCTAGACTTCCTCATGCAACTTTATTTAAGCCACAGCAACCATATGATAGTTGCCTTCGACAGTCCTTTAAAGATTTGCCAGTGACCAGTGTACATCTGCTACAAACCCTTCTTTCTATAGAACCATACAAACGTGGAACTGCCACATCTGCTCTATCATCAGAGTATTTCAAAACAAAACCTTATGCGTGTGACCCATCAAGCTTGCCAGTATACCCACCTAGCAAGGAAATCGATGCAAAACACAGGGAGGAATCAAGGAAAAAAATTAGCGGACGAGTGCGTGGAACTGAAACAAGAAAACCGTCAAGAAAACCTCTGGGATTCAATAAACTAGCCCCAGCAGAGGATTTGGCAAGTCAAACTCAGACTTCCCAGAAGGTCAATGTTAGATCTTTCCGTGTCCTTGAAGAGGAGAGGACTAAAATAGGTGACAAAGCACAAAAGCCATCAAGTGGTAAACCTGAAGATGCTTCTCATGTGAAGAATGCTTCTCAAGGAGATATTCCCATTTCTGGACCATTACAAGTTTCAACATCAAGTGGCTTTGCATGGGCCAAAAGCCGTAAAGATGACACTTCATTTCGATCCCATTGTCGAACTATTTCAAGAGGACATACTTTCAATCCATTAGAACCTTGTACATTAAATTCAAGGAATAATTTGGACACCAGAAACCAGGAAAATAAGGAGTTTTCTGGAGGATGCACCAATTCTAGGGGCCATGACCTTCTTGAAATTTCTAAACTTTCAATGCAGAATCAATGGAGTAAGTTTGATCGCCCAGATTCATTTGATGCTTCAGATGAGTACCACTCGCAAGAATTGTCTATCGCCCTTTATCATAGAGAAGATTCAGCTTCCAAGAGAAGTAACCTGAGTTTTCAAGATCAAGGGGAAAAGGTTGAATTTTCTGGGCCCCTACTATCTCAAATGCACACAGTTGATGAGCTCTTGGAAAGGCATGAGCGTCACATCCGGCGAACTGTCCGGAGATCATGGTTTCAGAGAGGTAAGAAGCTTGGGAAGTAA 2034 0.4823 MGCVSSKQAVSVTPAIDHSGAFRSNAGGLAEPEKKRSKKRTESGGASQSEVGESGRTSSNCDSLSFRLGNLHKYVQGEHVAAGWPAWLSAVAGEAIHGWVPLRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSSPDIKFTEPQIKCYMKQLLVGLEHCHLRGVMHRDIKGSNLLVNNEGVLKVADFGLANFVNPGHRQPLTSRVVTLWYRPPELLLGSTDYGPAVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSRLPHATLFKPQQPYDSCLRQSFKDLPVTSVHLLQTLLSIEPYKRGTATSALSSEYFKTKPYACDPSSLPVYPPSKEIDAKHREESRKKISGRVRGTETRKPSRKPLGFNKLAPAEDLASQTQTSQKVNVRSFRVLEEERTKIGDKAQKPSSGKPEDASHVKNASQGDIPISGPLQVSTSSGFAWAKSRKDDTSFRSHCRTISRGHTFNPLEPCTLNSRNNLDTRNQENKEFSGGCTNSRGHDLLEISKLSMQNQWSKFDRPDSFDASDEYHSQELSIALYHREDSASKRSNLSFQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKLGK* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1666 677 MobiDBLite consensus disorder prediction 29 43 - -
Gso6g1666 677 MobiDBLite consensus disorder prediction 410 439 - -
Gso6g1666 677 CDD STKc_CDK9_like 107 391 - -
Gso6g1666 677 Gene3D Phosphorylase Kinase; domain 1 94 189 - -
Gso6g1666 677 MobiDBLite consensus disorder prediction 44 59 - -
Gso6g1666 677 MobiDBLite consensus disorder prediction 450 465 - -
Gso6g1666 677 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Gso6g1666 677 MobiDBLite consensus disorder prediction 402 509 - -
Gso6g1666 677 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 670 - -
Gso6g1666 677 Pfam Protein kinase domain 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1666 677 MobiDBLite consensus disorder prediction 466 490 - -
Gso6g1666 677 Gene3D Transferase(Phosphotransferase) domain 1 190 429 - -
Gso6g1666 677 ProSiteProfiles Protein kinase domain profile. 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1666 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Gso6g1666 677 PANTHER CELL DIVISION PROTEIN KINASE 1 670 - -
Gso6g1666 677 SMART serkin_6 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1666 677 MobiDBLite consensus disorder prediction 1 59 - -
Gso6g1666 677 SUPERFAMILY Protein kinase-like (PK-like) 100 398 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1666 Gso-Chr6 17799703 17807217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1666 99 450 Core Cell Cycle Gene Families AT5G10270 48.913 5.88e-115 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso6g1666 Pkinase 1.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1666 - - gmx:100803328 1351.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1666 6 17799703 17807217 Gso6g1666 6 17799703 17807217 ECH
Gso4g1389 4 40830160 40836383 Gso6g1666 6 17799703 17807217 GST