Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1664 ATGGCTCTCTTCCGAAGGTTCTTTTACTGGAAACCGCCGGATCACCTCCTCGAGATCTCCGATAGACTCTATGTTTTTGATTGCTGCTTCTCCAAGAATGTGTTGGAGGAAGAGGAGTACAAGGCTTATATTGGGGGCATTGTGGCTCAACTACAGGATCACTATCCGGATGCTTCTTTCATGGTGCTCAATTTCAGACAAGGAGATAAGCGCAGTCGAATTTCAGACATTATGTCTCAGTATGAGATGACAGTTATGGAGTACCCTCAGAAATACGAGAGTTGTCCACTTCTTCCTTTAGAGATGATTCACCATTTCCTTCGGTCAAGCGAGAGCTGGCTGTCTCTGGAGGGGCAACAAAATGTGCTTTTGATGCACTGTGAAAGGGGTGGTTGGCCTGTGCTCGCATTTATGCTAGCTGGTCTTCTATTGTACAGGAAACAGTACAGTGGGGAGCACAAGACTCTTGAAATGGTGTACAAGCAAGCACCTAGAGAACTTCTCCACCTTTTATCTCCTTTAAATTCGCAACCTTCTCATTTGAGATATCTTCAGTACATTTCCAGGAGGCATTTGGGTTCTATGTGGCCTCCTCCAGATACACCCTTATATTTGGATTGCCTCATTCTTAGAGTCCTTCCATTGTTTGATGGTGGAAAAGGTTGCAGGCCAGTTGTGCGTGTCTATGGTCCAGACCCTTCAAAACCTGCCAACAGAGGTTCTAAGCTTCTTTTCTCGACCTCAAGGACCCAAAATCTTGTTCGCCACTACCAGCAGGAAGAATGTATGCTTGTGAAAATTGACATCCATTGTCGTGTTCAAGGAGATGTGGTTCTTGAGTGCATACATTTAAGTGAAGATCTTGTTCGTGAGGAGATGATGTTTAGAGTCATGTTTCATACTGCATTTGTACGGTCAAATATATTGATGCTGAGCCGTGATGAAATTGATATTCTGTGGGATGCAAAGGATCAGTTCCCTAAGGACTTCAGATTTGAGGTGCTTTTTTTGGATGCTGATGCTGTTATACCTAATCTAACCACATTCAATGCGAGTGAATATGCAAATGACACTGAATGTGCTTCACCTGAGGCTGAGGAATTCTATGAAGCGGAAGAGATCTTCAGCAATATAATTGATGCTCAAGAAGGTAAGGGGGATTACGATTCTCCAATGGTTCTTGATGATGGAAGTCATAAAGAGCTCTGGAAAGAGTATTCAGATCCTCATACTTTTCAGGATTTCATGTTAGATGATGGGATTCACCAACAGGTTGATGATGTGAAGTACAAGCTTGACGAGAGGGTGGTTTCAGATACTCATGCTTTGAAAGATATTGGCGTGGATTATGGAGTCACTTTTATGACAAAGGAAGTCAGTGTGGATGCGCATGATGAGTTGTCAGGTATGCAGAACAAGTGTGATGAAGATAACAATGAAAAGAAACAACTTCCTTCAAGCTCAAAGCCAGTGGGAGATACAGTTGTACCAAAGCAAAAAACTAAAGAACAAGAACCACATGGTTTTCAGGCAAAACAAGCAAAACCCAATGCAACAACTAGGTGGATTCCTTCTAATAAGGGTTCTTATCAAGATTCAATGCACGTCTCATATCCACCATCAAGAAATAATAATTCACCAGCTAACCTTTCAAATGTTACCTCAGCAAAGGAGAAGATTACTGATGCCAAAGGAAAATCTATTTCTGGTTCTTATGTCTCTGAAGTAATTGTTTCTATGGACATGAGAAATGACCTGAAAAGCTGTATAGGGGATAATTCAAAATCTTCAGACAGCATAGCTGAAATAGACTCAAACTCTCCACTACCATCATTACTGTCAGTCAAAGAGACATCTCTTCAATCAGCTACTCAAACACCACAACAGAGCTACAATCAAATGTTACAACTTCATCCTCCACCTCCTCCTCCACCTCCATTTTTTGGGCAGAATAGAGGGAGCTTCATAACTCCTACCCAATGGACATCTGTTTATTCATCCATTGCCATTGTTGGACAAAATAATGGTGCTTTAGCTCCTCCTCCCTCAGCTCCTTCCATTGCAAGTGGTGCAATTACATCAAAAGTTTCTGAATTAATTGATGCAGTTTCCGTTCCCCATCCTCCACCATCACTACCACCACCACCACCTCCTCCTCCTCCTATGTTGTCTACAATTGGAGCTCCACTGCCTCCTTCCTCATTACCTCCAACATCATTTAAAGCTCCACCGCCACATCCACCTTCACCTCCTTTAAGTAAATCTACACCACTGCCTTCTCCTCCTTTAAGTACTGCTCCACCACCACCACCTCTTCCTGCATCAAGTGGAGCCCCACCTCCACCGCCACCTCCTTCATTGTCTAGAGCCCCACCTCCCCCGCCTCCACCAACTCATAGACCACCACCTTCAATGCATGGAGGCACACCTCCTCCACCACCTCCAAGTGGTCGAGGCCCACCTCCTACTGGATATCGGGCCCCTGCCGCTCCTGCTCCTTTTGGACCTCTAGGTGGGGCTCCTTCTCCGTCGCCACTTGGAACTGATCCAAGAGGGAGAGGGCGTGGACTTACACGTCCTACGGGAGCTGGTGCTATGGCAGCTCGGCGGTCCTCCTTAAAGCCTCTGCATTGGAGTAAGGTAACAAGGGCATTGCAAGGAAGTTTATGGGATGAATTACAAAGACGTGGAGACCCTCAAATAACACAAGAGTTTGACGTTTCAGAGATAGAAAAGCTTTTTTCTGCAAATGTTCCAAAACCTGCTGATTCAGATGGTAAATCTGGTGGGCGACGTAAATCTGTTGGATCCAAAACTGACAAAATCCACTTGATTGACCTAAGGAGGGCCAATAATACTGAAATTATGCTCACAAAGGTTAAGATGCCACTTCCTGATATTATGGCTGCAGTACTGGCTATGGATGATTCAGTGTTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCTACCAAAGAGGAAATAGAGCTTTTAAAGGGATACACCGGTGATAAGGAGAATTTGGGGAAGTGTGAAAAGTATTTTTTGGAGGTGATGAAAGTGCCAAGAGTGGAGTCAAAATTCAGAGTTTTCTCTTTCAAGATTCAGTTTAGGACTCAGATTACAGAGTTTAAGAAGAGCTTAAACACAGTGAACTCTGCCTGTGAAGAGGTCCGAAACTCATTCAAACTGAAGGAGATTATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGAACAGCAAGGGGATCTGCTGTTGGATTCAAGTTAGATAGTCTTCTAAAACTAACTGAAACTCGTGCTTCAAACAGTAAAATGACACTCATGCATTTTCTTTGCAAGGTCTTAGCTGAAAGGTTTCCCGGACTCCTTGATTTTCACCATGACCTTGTTAGCCTGGAAGCAGCCACTAAGATACAATTGAAATCATTAGCAGAAGAAATGCAGGCAATCATCAGGGGATTAGAAAAGGTTAAACAGGAGCTTGCTGCATCTAAAAATGATGGCCCTGTGTCTGACATTTTTCGTAAGACATTGAAGGAATTCATTGCTGTTGCAGAGTCGGAGGTGGTATCTGTAACAAACTTATATTCTGTGGTGGGTAGAAATGCAGATGCACTTGCCCTATATTTTGGTGAGGATCCTGCCCGTTGTCCTTTTGAGCAAGTTACTGTAACCCTCTTAAATTTTACAAGGTTGTTTCTGAAAGCACATGAAGAGAATTCCAAACAAGCAGAGTTAGAGAAAAAGAAAGCGGAGAAAGAGGCTGAAATGGAGAAGGCTAAAGGCATTAACTTGATAAGGAAGAGTGGAAAATATGAAGGAGAAGAAAGCGGAGAAAGAGGTTGA 3861 0.4318 MALFRRFFYWKPPDHLLEISDRLYVFDCCFSKNVLEEEEYKAYIGGIVAQLQDHYPDASFMVLNFRQGDKRSRISDIMSQYEMTVMEYPQKYESCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEHKTLEMVYKQAPRELLHLLSPLNSQPSHLRYLQYISRRHLGSMWPPPDTPLYLDCLILRVLPLFDGGKGCRPVVRVYGPDPSKPANRGSKLLFSTSRTQNLVRHYQQEECMLVKIDIHCRVQGDVVLECIHLSEDLVREEMMFRVMFHTAFVRSNILMLSRDEIDILWDAKDQFPKDFRFEVLFLDADAVIPNLTTFNASEYANDTECASPEAEEFYEAEEIFSNIIDAQEGKGDYDSPMVLDDGSHKELWKEYSDPHTFQDFMLDDGIHQQVDDVKYKLDERVVSDTHALKDIGVDYGVTFMTKEVSVDAHDELSGMQNKCDEDNNEKKQLPSSSKPVGDTVVPKQKTKEQEPHGFQAKQAKPNATTRWIPSNKGSYQDSMHVSYPPSRNNNSPANLSNVTSAKEKITDAKGKSISGSYVSEVIVSMDMRNDLKSCIGDNSKSSDSIAEIDSNSPLPSLLSVKETSLQSATQTPQQSYNQMLQLHPPPPPPPPFFGQNRGSFITPTQWTSVYSSIAIVGQNNGALAPPPSAPSIASGAITSKVSELIDAVSVPHPPPSLPPPPPPPPPMLSTIGAPLPPSSLPPTSFKAPPPHPPSPPLSKSTPLPSPPLSTAPPPPPLPASSGAPPPPPPPSLSRAPPPPPPPTHRPPPSMHGGTPPPPPPSGRGPPPTGYRAPAAPAPFGPLGGAPSPSPLGTDPRGRGRGLTRPTGAGAMAARRSSLKPLHWSKVTRALQGSLWDELQRRGDPQITQEFDVSEIEKLFSANVPKPADSDGKSGGRRKSVGSKTDKIHLIDLRRANNTEIMLTKVKMPLPDIMAAVLAMDDSVLDVDQVENLIKFCPTKEEIELLKGYTGDKENLGKCEKYFLEVMKVPRVESKFRVFSFKIQFRTQITEFKKSLNTVNSACEEVRNSFKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTETRASNSKMTLMHFLCKVLAERFPGLLDFHHDLVSLEAATKIQLKSLAEEMQAIIRGLEKVKQELAASKNDGPVSDIFRKTLKEFIAVAESEVVSVTNLYSVVGRNADALALYFGEDPARCPFEQVTVTLLNFTRLFLKAHEENSKQAELEKKKAEKEAEMEKAKGINLIRKSGKYEGEESGERG* 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1664 1286 MobiDBLite consensus disorder prediction 469 551 - -
Gso6g1664 1286 Coils Coil 1145 1169 - -
Gso6g1664 1286 Coils Coil 1239 1268 - -
Gso6g1664 1286 MobiDBLite consensus disorder prediction 700 871 - -
Gso6g1664 1286 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Gso6g1664 1286 MobiDBLite consensus disorder prediction 513 551 - -
Gso6g1664 1286 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Gso6g1664 1286 MobiDBLite consensus disorder prediction 589 608 - -
Gso6g1664 1286 Gene3D Formin, FH2 domain 864 1250 IPR042201 -
Gso6g1664 1286 Pfam Formin Homology 2 Domain 870 1238 IPR015425 -
Gso6g1664 1286 MobiDBLite consensus disorder prediction 469 483 - -
Gso6g1664 1286 SMART PTEN_C2_2 198 338 IPR014020 -
Gso6g1664 1286 CDD PTP_PTEN-like 16 190 - -
Gso6g1664 1286 SUPERFAMILY Formin homology 2 domain (FH2 domain) 940 1266 - -
Gso6g1664 1286 Gene3D Protein tyrosine phosphatase superfamily 15 202 IPR029021 -
Gso6g1664 1286 PANTHER FORMIN-J 1 1268 - -
Gso6g1664 1286 Gene3D - 203 336 - -
Gso6g1664 1286 ProSiteProfiles Formin homology-2 (FH2) domain profile. 863 1264 IPR015425 -
Gso6g1664 1286 SMART it6_source 863 1285 IPR015425 -
Gso6g1664 1286 MobiDBLite consensus disorder prediction 916 937 - -
Gso6g1664 1286 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Gso6g1664 1286 MobiDBLite consensus disorder prediction 706 840 - -
Gso6g1664 1286 MobiDBLite consensus disorder prediction 622 650 - -
Gso6g1664 1286 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1664 Gso-Chr6 17760952 17775385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1664 1 623 FH2 protein (formin) Gene Family AT5G07740 56.618 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1664 - - gmx:100779085 1415.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1664 6 17760952 17775385 Gso6g1664 6 17760952 17775385 ECH
Gso4g1390 4 40895826 40921175 Gso6g1664 6 17760952 17775385 GST