Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1660 ATGTCTTCTTCTCTTTCCCCTTGTCCCTCTTCCCTCGACCAAATCCTTCGCGACGTCGACGACTACGTTCTGGAAAATGGATCAGAAGATTTGTCATGGGACACACTTCATTATGTGTACGAGCTTGTGAAGAATGGGAATGCGGCATTTCGAGAGAACAGAATGCAAGAGGCAATCAACTTATACTCGAGAGCCAATAACATCAAATCAGGTGATCCAATCATCCTCAGCAATCGAAGTGCAGCTTATATTAGGATTAGCGAATATTTCATGCGCAGAACATCATCATCTTCAGAACGTAGGCCATTGAGTGGGCTTGAACCCACAACAATTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTTGTTGAACTCCAAAGTAATTCAGCAAAATCATATCTTTTAAAGGCCAGTGCTCTTTTACTGTTAGAGAAATATGAAAAAGCCCGGGATGTTATTCTTTCAGGTCTTCAAGTTGATCCTTTTAGTAATTCTCTTCGGGCTTCTCTTCAAAATTTGGAAAGAGTTTCATCTAGTTCAACAGGGATGAGTACACATGGACATCCAGAACGTAATGATGATTTTGATTGCACTCTCTGCCTGAAGTTACTGTATGAACCTGTCACAACCCCTTGTGGACATTCTTTTTGCCGATCGTGTCTATTTCAGTCAATGGATCGTGGAAACAGATGCCCATTGTGTAGGACAGTTCTGTTTATTAGTCCCAGAACATGTTCCATCAGTGTGACATTGAAGAACATTATACAAAAGAACTTCCCAGAGGAATATGCAGAAAGGAAGCAAGAGCATGACGGTTTAATCAATGCTGGTGTAGATTTACTCCCTCTTTTTGTCATGGATGTTGTCATACCATGTCAGAGGTTTGCACTCAATATATTTGAACCTCGGTATAGACTCATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGCTATACTTGATTCAACAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAAATAACAGAGTGTGAACCACTTCCAGATGGTCGTTTTTATATAGAGATTGAAAGTCGTAGGAGATTTCGTATCATCCGTTCTAGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATACAAGATATTATGCCACCAGAAGGAACAAGTGAAAGAGAGACTTTACAACAACAAACATATAATGCAGCTGAAGATGCTCGATCGTGGATAGCAAGAGCTAAAGAAGCAGCAAAACATGACTGCTGCAATACTAAACTACTGAAATATCATACAGATCCAAGAAAACTTGAGAGACTCGCCAGTGTTGAAGTAATGATGCCCTCACCAAAAGACCCTGAGCGCTTTAGTTTTTGGCTGGCTACTCTCTCCAATCGGAGGCCTGCGGAAAGATTGGATCTCCTACGCATAAGAGACACTGCTGAGAGGATTAGACGGGGCCTGATATTTCTCCGACAAGAAGAACAAGGCTGCAGAATTCAGTAA 1497 0.4195 MSSSLSPCPSSLDQILRDVDDYVLENGSEDLSWDTLHYVYELVKNGNAAFRENRMQEAINLYSRANNIKSGDPIILSNRSAAYIRISEYFMRRTSSSSERRPLSGLEPTTIAELGLKDAEKLVELQSNSAKSYLLKASALLLLEKYEKARDVILSGLQVDPFSNSLRASLQNLERVSSSSTGMSTHGHPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQEHDGLINAGVDLLPLFVMDVVIPCQRFALNIFEPRYRLMVRRIMEGNHRMGMAILDSTGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSRDQDGYRVAEVEWIQDIMPPEGTSERETLQQQTYNAAEDARSWIARAKEAAKHDCCNTKLLKYHTDPRKLERLASVEVMMPSPKDPERFSFWLATLSNRRPAERLDLLRIRDTAERIRRGLIFLRQEEQGCRIQ* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1660 498 PANTHER RING FINGER PROTEIN 127 16 490 - -
Gso6g1660 498 SUPERFAMILY PUA domain-like 281 488 IPR015947 -
Gso6g1660 498 SUPERFAMILY RING/U-box 191 260 - -
Gso6g1660 498 Pfam ATP-dependent protease La (LON) substrate-binding domain 281 489 IPR003111 -
Gso6g1660 498 ProSiteProfiles Lon N-terminal domain profile. 278 490 IPR003111 -
Gso6g1660 498 SMART lon_5 280 490 IPR003111 -
Gso6g1660 498 SMART ring_2 197 234 IPR001841 -
Gso6g1660 498 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Gso6g1660 498 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 16 490 - -
Gso6g1660 498 Gene3D - 431 490 - -
Gso6g1660 498 Pfam Zinc finger, C3HC4 type (RING finger) 197 234 - -
Gso6g1660 498 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Gso6g1660 498 Gene3D - 279 380 IPR046336 -
Gso6g1660 498 Gene3D Tetratricopeptide repeat domain 38 187 IPR011990 GO:0005515
Gso6g1660 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 275 IPR013083 -
Gso6g1660 498 SUPERFAMILY TPR-like 39 169 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1660 Gso-Chr6 17709613 17724858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1660 185 238 C3H Transcription Factor Family AT1G74990 35.088 4.63e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1660 - - gmx:100802277 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1660 6 17709613 17724858 Gso6g1660 6 17709613 17724858 ECH
Gso4g1392 4 40946025 40955083 Gso6g1660 6 17709613 17724858 GST