Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1657 ATGGAGTCTGGTGAGGAGATTAATTTGAACATAGAGAGTGGTGGGAAGAGTGGTGGTGATGGGTTCATTGATAGGAGTAAGGTGCGGATTTTGTTGTGCGATAACGATTCCAAGAGTTCTCAAGAGGTTTTCACGCTTCTTTTGAGGTGTTCTTATCAGGTTACCTCGGTAAAGTCGGCAAGACAGGTAATTGATGCACTGAATGCAGAAGGGCAACATATAGATATCATACTGGCTGAACTTGACCTTCCGATGAAGAAGGGTATGAAGATGTTGAAGTACATAGCACGTGATAAAGAGTTTCGCAGAATCCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCATTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGACGGAGGCGCATGCTTGGACTTGTAGAGAAGAACATCTTGAATTACGATTTTGATCTGGTAGTATCTGACCCTAGTGATGCCAACACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCACTAATCCAGAGGCAGGAATATCAGTCCAACAAGAACAAGAGTCTACTATTGCAAATGCTGCTGCTGTTGAGGGACCTCCAGATGCTCATGCATCAGAATGTGGGCCTGATGTGGATGGAGTTAATGATCACCAAACAGCACATTTTTCATCTGGTCCGAAGAAGAGTGAACTAAGGATAGGGGAGTCATCAGCCTTCTTCACGTATGTTAAAGCATCAATACTTAAGAGCAACTTCGAAGGGGTTGTTAATGTAGACAACAATGGTGCTACGCATGTTGGGATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTGAATAGCCTTCAAATACTGGAAAATGGAGAGGCATGTGAAAGTCAATCGCAAGATGACTTACCCAGCAGCACTAGTATTCCTGATTCTTTGTCTATTGAGAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCACAGCAAAAGCACTACAGGGAAGAAAATTCACAACAGGGTGTGATGCATCCCAGAAATGGGACCCATTGTTCCGAGCATGAAGTATCTGGCATGGCTTCCCAACATGCTTATCCATATTATATTTCAGGGGTTGTTAATCATGTTATGATGCCTTCATCAGCACAAATGTATCATCAAAAGAATATCCAGGACCTACAGAATCATACTAGCACAGCTATGATTTCACAATACAATCATCTTCCCCAAGGCGGTCCTCATGGAACGGGGATGACATCCTTCCCATACTACCCAATGAGCATATGCTTACAACCTGGTCAGATTCCTAATCCTCATTCATGGCAATCATTTGGAAACTCAAGTCCATCAGAAGCCAAATTAAGTAAAGTTGATAGGAGAGAAGCAGCATTGATGAAATTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTACATTAACAGGAAACGACTTGCTGAAAGGCGGCCTCGTGTAAGGGGACAGTTTGTCAGAAAGTTGAACGGTGCTAATGTGGATCTTAACGGGGAGCCTGCATCAATTGACTATGACGAAGATGACGAAGAGGATGAAGATGACCAGGGAGCAAGAGATTCTTCTCCTGAGGATGCTTGA 1677 0.4317 MESGEEINLNIESGGKSGGDGFIDRSKVRILLCDNDSKSSQEVFTLLLRCSYQVTSVKSARQVIDALNAEGQHIDIILAELDLPMKKGMKMLKYIARDKEFRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYDFDLVVSDPSDANTNSTTLFSDDTDDKSKRSTNPEAGISVQQEQESTIANAAAVEGPPDAHASECGPDVDGVNDHQTAHFSSGPKKSELRIGESSAFFTYVKASILKSNFEGVVNVDNNGATHVGMEVMHQACAQQGVNSLQILENGEACESQSQDDLPSSTSIPDSLSIERSCTPPASMEVSQQKHYREENSQQGVMHPRNGTHCSEHEVSGMASQHAYPYYISGVVNHVMMPSSAQMYHQKNIQDLQNHTSTAMISQYNHLPQGGPHGTGMTSFPYYPMSICLQPGQIPNPHSWQSFGNSSPSEAKLSKVDRREAALMKFRQKRKERCFDKKIRYINRKRLAERRPRVRGQFVRKLNGANVDLNGEPASIDYDEDDEEDEDDQGARDSSPEDA* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1657 558 MobiDBLite consensus disorder prediction 533 558 - -
Gso6g1657 558 SMART REC_2 28 143 IPR001789 GO:0000160
Gso6g1657 558 ProSiteProfiles Response regulatory domain profile. 29 147 IPR001789 GO:0000160
Gso6g1657 558 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 8 541 - -
Gso6g1657 558 SUPERFAMILY CheY-like 26 154 IPR011006 -
Gso6g1657 558 MobiDBLite consensus disorder prediction 311 362 - -
Gso6g1657 558 MobiDBLite consensus disorder prediction 176 249 - -
Gso6g1657 558 Pfam CCT motif 478 520 IPR010402 GO:0005515
Gso6g1657 558 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 541 IPR045279 GO:0009736
Gso6g1657 558 MobiDBLite consensus disorder prediction 311 345 - -
Gso6g1657 558 Gene3D - 28 227 - -
Gso6g1657 558 ProSiteProfiles CCT domain profile. 478 520 IPR010402 GO:0005515
Gso6g1657 558 MobiDBLite consensus disorder prediction 523 558 - -
Gso6g1657 558 Pfam Response regulator receiver domain 30 141 IPR001789 GO:0000160
Gso6g1657 558 MobiDBLite consensus disorder prediction 196 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1657 Gso-Chr6 17638436 17644601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1657 18 557 Response Regulator Gene Family AT5G61380 50.789 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gso6g1657 Response_reg 2.4e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1657 K12127 - gmx:100271889 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1657 6 17638436 17644601 Gso6g1657 6 17638436 17644601 ECH
Gso4g1395 4 41077782 41083543 Gso6g1657 6 17638436 17644601 GST