Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1648 ATGGGAAGGAGTCCTTGCTGTAGTCATGAGGAATTGAGGAAAGGGGCATGGACGGTTCAAGAAGATCAGAAACTCATTGCTTACATTCAGAAACATGGCACAGGAAGCTGGCGTACCTTGCCACAAAAAGCAGGTCTTCAAAGATGTGGCAAGAGTTGCAGGCTGAGATGGTTTAACTACCTTAGACCTGACATTAAGAGAGGAAAATTAAGCCAAGAAGAAGAGCAGACAATTATAAAACTTCAGGCGGTTCTTGGCAACAGGTGGTCAAGTATTGCAAAGCACTTACCAAAGCGAACTGATAACGAAATCAAGAACTATTGGAACTCATATCTGAGAAAGCAGTTTGAAAAGAATGCCGGGGATTCCTCAAGTCCAAAACCAATTAGTTCTGACAGTTCCCCAGAATCAAAATCCAATGACATGTGCATGGTTCCATTAGAGAAAACTGATTGCCATGAACCAAACACCAACCAGTCTCATCAGCACAAATTATCAAAGTCAACCTCATCTTCAACTCATCTACTCAACAAAGTTGCTAGTAAAATTCTGGCATCAGGGTACCTTGAAGCAATCAAATCATGCCAACCTGTTGTTGCTGGGAACAGCAAAAGTGAAGGCGTAGTTAAAAGTGGAATTGGGCCACAAAAGGACAATATTAGAGACCCCCTTGTGCCTAATTTGACCTCACCAAGTCATTCAGTAACTTCTGCTAAGTTACTGAACAAGATGGCTACTTCACTCCCTCATAAAGTTTATGGCCTTGAAGCTGTAAAAGCTGTATTCTCAAAACTGATGGAAAGCAGTGAAAAAGGTGGCATTGCTACTAGTGATGGTAGTAGCTTTGTTGGCAGTGATCAAGTTGGAAGTTGTTTAAATGCTTTAAGCCCTTTTGAGGATGGACCACACATATCAAAAATAATTGACTCCCCTTCTAGTCCTACACTAATGTTCAACCAAGTGACCACACCCTCATGCTTTTCAGAAGATAATGAAGATAACTGGCAATGTGTTTCATCTAACTATGTTTCCTTCAGAAATTGTGCTGCAAGTGGTGGTGGTGGTGACTGCAGTGTCTCTGAGATCAACTTGGGTGAGTCTTCTAGTTCCACATCATGCTTCCTGTTTGAGAATGCTGACCTGGGAACATGTGATGATGAGATAAGGAAGTACATTCAGTATCTGTAG 1188 0.4175 MGRSPCCSHEELRKGAWTVQEDQKLIAYIQKHGTGSWRTLPQKAGLQRCGKSCRLRWFNYLRPDIKRGKLSQEEEQTIIKLQAVLGNRWSSIAKHLPKRTDNEIKNYWNSYLRKQFEKNAGDSSSPKPISSDSSPESKSNDMCMVPLEKTDCHEPNTNQSHQHKLSKSTSSSTHLLNKVASKILASGYLEAIKSCQPVVAGNSKSEGVVKSGIGPQKDNIRDPLVPNLTSPSHSVTSAKLLNKMATSLPHKVYGLEAVKAVFSKLMESSEKGGIATSDGSSFVGSDQVGSCLNALSPFEDGPHISKIIDSPSSPTLMFNQVTTPSCFSEDNEDNWQCVSSNYVSFRNCAASGGGGDCSVSEINLGESSSSTSCFLFENADLGTCDDEIRKYIQYL* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1648 395 MobiDBLite consensus disorder prediction 118 140 - -
Gso6g1648 395 MobiDBLite consensus disorder prediction 118 172 - -
Gso6g1648 395 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso6g1648 395 CDD SANT 16 61 IPR001005 -
Gso6g1648 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso6g1648 395 Gene3D - 14 66 - -
Gso6g1648 395 SMART sant 66 114 IPR001005 -
Gso6g1648 395 SMART sant 13 63 IPR001005 -
Gso6g1648 395 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 195 - -
Gso6g1648 395 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso6g1648 395 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gso6g1648 395 CDD SANT 71 112 IPR001005 -
Gso6g1648 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso6g1648 395 PANTHER TRANSCRIPTION FACTOR MYB51 1 195 - -
Gso6g1648 395 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso6g1648 395 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso6g1648 395 Gene3D - 69 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1648 Gso-Chr6 17536786 17539426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1648 1 128 MYB Transcription Factor Family AT5G15310 70.312 1.62e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso6g1648 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1648 K09422 - gmx:100818639 767.689