Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1647 ATGGAAAACGTTTCGGTTCTTTTGTGTAATAAGGAAAAGGATCAGATGGATTTGCCTCCTGGGTTTAGGTTTCACCCAACAGATGAAGAGCTTATTAGTCATTACCTTTACAGAAAGGTCACTGACACCAACTTCTCAGCTAGAGCCATTGGAGAGGTGGACTTGAACAGGTCTGAGCCTTGGGATTTGCCATGGAAGGCCAAAATGGGAGAGAAAGAGTGGTACTTTTTCTGTGTGAGGGACAGAAAATACCCAACTGGTTTGAGGACTAATAGAGCCACTGAATCAGGATACTGGAAGGCTACAGGGAAAGACAAAGAGATTTTCAGAGGGAAATCTCTTGTGGGTATGAAGAAAACTTTGGTTTTCTACAAAGGAAGGGCTCCCAAGGGAGAGAAAACTGATTGGGTCATGCATGAGTATAGGCTTGATGGTAAATTCTCTGTTCACAACCTCCCCAAAACTGCAAAGAATGAGTGGGTGATTTGCAGGGTTTTTCAGAAGAGTTCAGGTGTGAAAAGGACTCATATTTCTGGGATGATGATGTTGGACTCTTATGGAAACGAAATGGTTTATTCTTCTTCTGCTTTGCCACCTCTCACTGATTCCTCACCTTCCATTGGCAACAACACCAAAGCACTGAGTGTGACTGATTCTGCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCCTAGAGGAATCTTTGATTCCTTGAACAACATCAATATCAGCATCAACAGCAACACCCTTTATGGAGTTTCTTCAAACCATTCATTTTACAATACTCAGGGGGTTCAACTTCAGGCTCCACCAACTTTGCCATTACCTAGTTCTTCAAACCATTACCTTAGAGCCTTTCTTGAAAACCAAGGAAATGGATCGAACATGAGCAACAATGGTTTTGAGCCAGAGAGGGAAATGGTCAGTGTCTCACAGAAAACAAGTCTTTCTACTGATGTGAAGGCTGAAATCTCTTCATTGGGTAAAAGGCACTTTGAGAATCAAAACAACCCAATTGCTTCAGCAGCTGCAGTTGCACCAATGGACCTTGCTACCTTGTGGAACTACTGA 1074 0.4283 MENVSVLLCNKEKDQMDLPPGFRFHPTDEELISHYLYRKVTDTNFSARAIGEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATESGYWKATGKDKEIFRGKSLVGMKKTLVFYKGRAPKGEKTDWVMHEYRLDGKFSVHNLPKTAKNEWVICRVFQKSSGVKRTHISGMMMLDSYGNEMVYSSSALPPLTDSSPSIGNNTKALSVTDSAYVPCFSNPIDVPRGIFDSLNNINISINSNTLYGVSSNHSFYNTQGVQLQAPPTLPLPSSSNHYLRAFLENQGNGSNMSNNGFEPEREMVSVSQKTSLSTDVKAEISSLGKRHFENQNNPIASAAAVAPMDLATLWNY* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1647 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 352 - -
Gso6g1647 357 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 7 352 - -
Gso6g1647 357 SUPERFAMILY NAC domain 12 168 IPR036093 GO:0003677|GO:0006355
Gso6g1647 357 Pfam No apical meristem (NAM) protein 19 143 IPR003441 GO:0003677|GO:0006355
Gso6g1647 357 Gene3D NAC domain 27 172 IPR036093 GO:0003677|GO:0006355
Gso6g1647 357 ProSiteProfiles NAC domain profile. 18 168 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1647 Gso-Chr6 17503675 17505828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1647 16 357 NAC Transcription Factor Family AT5G07680 55.977 3.41e-129 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso6g1647 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1647 - - gmx:547650 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1647 6 17503675 17505828 Gso6g1647 6 17503675 17505828 ECH
Gso4g1404 4 41328040 41330170 Gso6g1647 6 17503675 17505828 GST