Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1641 ATGGTGCTTTTGGGACTTCTCTTGGTGGGATTTCTCTCTCAGCTGGGTTCATCAGTTTCAGCTTCTGGTTATGGTTGGATGGATGCTCATGCAACCTTCTATGGAGGGGGTGATGCCTCTGGCACCATGGGTGGAGCATGTGGATATGGGAACTTGTACAGCCAGGGCTATGGAACAAACACTGCTGCTTTGAGCACAGCCTTGTTCAACAATGGTTTAAGCTGTGGGGCATGTTTCGAGATTAGGTGTGTTAATGACCAAAGGTGGTGCCTTCCACGCTCAGTTATTGTAACTGCAACCAATTTCTGTCCCCCAAACAATGCACTCCCTAATAATGCAGGTGGATGGTGCAACCCTCCCCTTCACCACTTCGACCTTTCCCAACCTATTTTCCAACAAATTGCTCAATACAAAGCTGGAATAGTACCCGTGGCTTACCGAAGGGTCCCTTGCCTAAAGAGAGGGGGAATCAGATTCACCATCAACGGCCACTCATACTTCAACCTAGTCCTAATTTCCAACGTTGGAGGTGTTGGTGATATTCATGCAGTTTCCATCAAAGGCTCAAGAACAAATTGGCAACCAATGACCAGAAATTGGGGCCAGAACTGGCAAAGCAACGCCTATCTCAATGGACAAAGCCTCTCCTTCAAGGTTACGGCTAGCGACGGGCGCACCGTGGTCTCTAATAATGTTGCACCCTCAAGTTGGTCCTTTGGCCAAACCTTCAATGGCCATCAATTCATTTAA 750 0.48 MVLLGLLLVGFLSQLGSSVSASGYGWMDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCVNDQRWCLPRSVIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPIFQQIAQYKAGIVPVAYRRVPCLKRGGIRFTINGHSYFNLVLISNVGGVGDIHAVSIKGSRTNWQPMTRNWGQNWQSNAYLNGQSLSFKVTASDGRTVVSNNVAPSSWSFGQTFNGHQFI* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1641 249 Gene3D - 12 151 IPR036908 -
Gso6g1641 249 PANTHER EXPANSIN-A15 8 248 IPR002963 GO:0009664
Gso6g1641 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Gso6g1641 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Gso6g1641 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Gso6g1641 249 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Gso6g1641 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Gso6g1641 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Gso6g1641 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Gso6g1641 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Gso6g1641 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Gso6g1641 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Gso6g1641 249 SMART dpbb_1 61 146 IPR007112 -
Gso6g1641 249 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Gso6g1641 249 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Gso6g1641 249 PANTHER EXPANSIN 8 248 - -
Gso6g1641 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Gso6g1641 249 Pfam Lytic transglycolase 61 146 IPR009009 -
Gso6g1641 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Gso6g1641 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Gso6g1641 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Gso6g1641 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Gso6g1641 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Gso6g1641 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Gso6g1641 249 Gene3D - 156 248 IPR036749 -
Gso6g1641 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1641 Gso-Chr6 17441892 17444849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1641 1 248 Expansin Gene Family AT2G03090 79.839 1.17e-150 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1641 - K20628 gmx:100799075 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1641 6 17441892 17444849 Gso6g1641 6 17441892 17444849 ECH
Gso19g0210 19 2782909 2785373 Gso6g1641 6 17441892 17444849 ECH
Gso2g0916 2 10475760 10478094 Gso6g1641 6 17441892 17444849 ECH
Gso4g1409 4 41481712 41484860 Gso6g1641 6 17441892 17444849 GST