Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1640 ATGGCCACCGTCACAACCCAAGCCTCCGCCGCGATTTTCCGGCCATGTGCCTCGAAATCGAGGTTTCTGACCGGCTCTTCCGGTAAACTCAACCGGGAAGTGACTATGAGGCCAATGGGGTGCCCTCCTTCTGCCTCTTTCAAGGTTGAAGCCAAGAAGGGAGAGTGGTTACCTGGCTTGGCCTCCCCAACTTACCTCAATGGCACTCTTCCTGGTGACAATGGATTTGACCCTCTGGGACTAGCTGAGGACCCAGAGAACTTGAGGTGGTACGTTCAAGCCGAGCTTGTGAATGGACGTTGGGCCATGTTGGGTGTTGCAGGAATGCTACTTCCTGAGGTTTTCACCAAGATTGGAATCATCAATGCCCCTCAATGGTATGATGCTGGGAAATCGGAGTACTTTGCTTCATCGTCGACCCTCTTTGTGATCGAGTTCATCTTGTTCCACTACGTCGAGATCCGGAGATGGCAGGACATCAAGAACCCTGGCTCTGTCAACCAAGACCCCATCTTCAAGCAATACAGCTTGCCCCAACATGAGTGTGGATACCCTGGTAGTGTGTTTAACCCCTTGAACTTTGCACCTACTTTGGAGGCCAAGGAGAAGGAACTTGCCAATGGGAGATTGGCTATGTTGGCATTCTTGGGATTCATAGTTCAACACAACGTGACAGGCAAAGGACCATTTGAGAACCTATTGCAGCACCTCTCTGACCCGTGGCACAACACCATCATCAATACAATTCGTGGCTACTAA 759 0.5099 MATVTTQASAAIFRPCASKSRFLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPQHECGYPGSVFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHLSDPWHNTIINTIRGY* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1640 252 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 252 - -
Gso6g1640 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Gso6g1640 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 252 IPR001344 GO:0009765|GO:0016020
Gso6g1640 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Gso6g1640 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1640 Gso-Chr6 17436070 17438425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1640 43 245 Chloroplast and Mitochondria Gene Families AT3G61470 52.358 4.32e-73 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1640 K08910 - gmx:100798548 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1640 6 17436070 17438425 Gso6g1640 6 17436070 17438425 ECH
Gso4g1410 4 41490233 41492131 Gso6g1640 6 17436070 17438425 GST