Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1630 ATGGGAAGACCACCTTGCTGTGATAAAATTGGGATTAAGAAAGGGCCTTGGACTCCTGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAACATGGACCCGGAAATTGGAGATCGGTTCCCAGTAACACAGGTTTGATGAGATGCAGCAAAAGCTGCAGACTCAGATGGACCAACTATCTCCGACCTGGTATCAAACGAGGCAATTTCACCGATCATGAAGAGAAAATGATAATCCACCTCCAAGCTCTTTTGGGTAACAGATGGGCTGCTATAGCTTCCTACCTTCCACAAAGGACAGACAATGACATAAAGAACTATTGGAACACCCATTTGAAGAAGAAGCTGAAGAAGATGCAAATTGGGGGTGGTAGTGATGATGATAATAATGATGACAAATCAAACTCTTCTAACAATTCACAAATAAAGGGTCAATGGGAAAGAAGACTTCAAACAGATATCCACATGGCCAAACAAGCCTTATGTGAGGCCCTATCTCTTGACAAACCAACCCAAATTTTCCCAGAGACCAAATTACCCTCCACTTCTTCACACCACCACCCCACAACAACAACAACACCAAACCAAACAACATCCTTGTATGCATCAAGCACAGAAAACATAGCCAGATTGTTGGAGAATTGGATGAAGAAATCACCAAATATGGCGACCACGACGACAACAACAATGGAGACAAAACCCTTCAGCAATAATAACATGGTAATAACCACAGGGTCTAGTTCTAGTGAGGGAACACAAAGCACAATCACATGCACACAGGAGTATGCCCTTGACTCCTTGTGGAGCTTCAACTCTGAACGCTCTTCTCAATCTGAAGAAAACACCAACTTGGGTGAGAGCAAGCCACAGTACCAAGAGCCTCAAGAGACACAAGTCCCTCTCATGTTGCTGGAGAATTGGCTCTTTGATGATGCTGCACCTCAATGCAATGAAGATCTAATGAACATGTCACTCGAGGAAAGTACAGAAGGGTTGTTCTAA 1002 0.4341 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPSNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQIGGGSDDDNNDDKSNSSNNSQIKGQWERRLQTDIHMAKQALCEALSLDKPTQIFPETKLPSTSSHHHPTTTTTPNQTTSLYASSTENIARLLENWMKKSPNMATTTTTTMETKPFSNNNMVITTGSSSSEGTQSTITCTQEYALDSLWSFNSERSSQSEENTNLGESKPQYQEPQETQVPLMLLENWLFDDAAPQCNEDLMNMSLEESTEGLF* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1630 333 CDD SANT 69 112 IPR001005 -
Gso6g1630 333 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 318 - -
Gso6g1630 333 MobiDBLite consensus disorder prediction 272 295 - -
Gso6g1630 333 SMART sant 66 114 IPR001005 -
Gso6g1630 333 SMART sant 13 63 IPR001005 -
Gso6g1630 333 CDD SANT 16 61 IPR001005 -
Gso6g1630 333 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso6g1630 333 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso6g1630 333 MobiDBLite consensus disorder prediction 175 198 - -
Gso6g1630 333 Gene3D - 68 164 - -
Gso6g1630 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 318 - -
Gso6g1630 333 MobiDBLite consensus disorder prediction 119 145 - -
Gso6g1630 333 Gene3D - 13 66 - -
Gso6g1630 333 MobiDBLite consensus disorder prediction 119 133 - -
Gso6g1630 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso6g1630 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gso6g1630 333 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso6g1630 333 MobiDBLite consensus disorder prediction 174 198 - -
Gso6g1630 333 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso6g1630 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1630 Gso-Chr6 17234298 17236337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1630 1 333 MYB Transcription Factor Family AT5G62470 51.743 1.47e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso6g1630 Myb_DNA-binding 6.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1630 K09422 - gmx:100794319 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1630 6 17234298 17236337 Gso6g1630 6 17234298 17236337 ECH
Gso4g1421 4 41899285 41901190 Gso6g1630 6 17234298 17236337 GST