Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1613 ATGTCTAGCAGGAGGTCACGGTCAAGGCAAACAAGTAGTTCAAGGAATATCACCGATGATCAGATCAATGATCTTGTCTCTAAGTTGCAACAGCTTCTTCCAGAGATTCGCGATAGGCGCTCTGACAAGGTTTCAGCTTCCAAGGTGTTGCAAGAGACATGCAACTATATTAGAAGCTTACACAGGGAAGTGGGTGACCTAAGCGAGCGTTTATCTGAGCTCCTGGATACAACTGACACGGCTCAAGCTGCAATAATTAGAAATTTACTGATGCAATAG 279 0.4444 MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSLHREVGDLSERLSELLDTTDTAQAAIIRNLLMQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1613 92 Coils Coil 57 77 - -
Gso6g1613 92 PANTHER TRANSCRIPTION FACTOR PRE3 1 91 - -
Gso6g1613 92 Pfam Helix-loop-helix DNA-binding domain 20 61 IPR011598 GO:0046983
Gso6g1613 92 MobiDBLite consensus disorder prediction 1 20 - -
Gso6g1613 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 76 IPR036638 GO:0046983
Gso6g1613 92 CDD bHLH_AtPRE_like 17 77 - -
Gso6g1613 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Gso6g1613 92 Gene3D - 18 88 IPR036638 GO:0046983
Gso6g1613 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1613 Gso-Chr6 16923221 16925484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1613 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 70.968 1.21e-38 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso6g1613 HLH 6.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1613 - - gmx:100787967 164.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1613 6 16923221 16925484 Gso6g1613 6 16923221 16925484 ECH
Gso19g0188 19 2323308 2326161 Gso6g1613 6 16923221 16925484 ECH
Gso2g0161 2 1632489 1634133 Gso6g1613 6 16923221 16925484 ECH
Gso4g1441 4 42501310 42503637 Gso6g1613 6 16923221 16925484 GST