Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1610 ATGGAAAATGGAAACACAGCCAACGAACCCGCCAGCTTCTGGACTCAAGCAAACGCTCTTCTTAGGAAGAATTTAACCTTTCAGAAACGAAATGTTAAAACAAACGTTCGACTCATCATGTCCCCGTTCATTTTGTGTCTGTTGCTGGTTCTGCTCCAAAGCCTAGTGGAGAACCAACTGGACAAGGCTGAGAACAAGTGTGGCTGCGTTTGTGTTAGGAGACAAGGGGACACGTGTCTCGAGGAGGAGTGCGGGGTTGAGCATTCGGATTTGGACCAGGTTGCCACGTGTCCCATTCCCAGCCCTCCAGAATGGTCTCCTCTGTTGCAAGTGCCGGCACCACAGTACCGTGCCGTGAGAACAGATTATTTCCCATTTTCTGATTTTCCAAACTCGTCCTGCCGGAGGAATGGCTCTTGCCCTGTCACTATGTTCTTCACTGGCACTAACCAATCTTTTGGAGAAATTATATCTAGGAATATGATCCCAAGTAACTTGAGTTCTATAAACAGTTCTGATATTACGGCTAGTTTGGCATCAAATGTAGTGGGATCAGATTCAGAGCCAGAGAACACCAATTTTCTGGAACCTGCTTTCTTTTCAGACCTTCCTATTTATTATCTACAGAATCAGTGCACACAGAACTCTACATTCTCCGTTTCTCTTCAGATAGCAGGCATTAGCAAGCAGCAAGAGGTAATATGTGCTCAGGGTTTACGTTTATGGCGTAATAGTTCTTCTGAGGTGAACAATGAGCTATATAAAGGTTATCGGAGAAGTAACACAGAGAGACAGATCAATGAGATAGCTGCAGGTTATGATTTTTTAAATTCAAATCGGAGTATATTTAATGTCAGCATATGGTACAACTCAACCTACAAAAATGACACTGGCTTTAATCAAATTGCATTGGCGCGTATTCCTCGTTCTGTAAATTTGGTATCAAATGCCTACCTTCAGTTTCTATTGGGACCTGGTACCAAAATGTTTTTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCCCGATTAAATTTGATTTGGCTTCTCTTTTGGGTGGTCTCTTCTTTACATGGGTCATCCTACAACTTTTCCCTATTGCCTTGACATCGTTAGTATATGAGAAGCAACAAAACTTAAGAATCATGATGAAAATGCATGGCCTTGGAGACGGGCCATATTGGATGATTTCGTATGGTTATTTTCTTGCCATATCCATTGTCTACATGCTGTGTTTTGTGATTTTTGGCTCAGTCATAGGGTTGAATTTCTTCACAATGAATGACTACAGCATCCAATTTGTGTTTTATTTCATCTATATAAATTTACAAATTTCACTGGCTTTTTTATTGGCTTCCCTGTTTTCAAATGTTAAAACTGCTACAGTACTTGCATACATAGGTGTGTTTGGAACTGGGCTATTAGCTGGCTTTCTTTTCCAATTTTTTGTTCAAGACACGTCGTTTCCAAGAGGGTGGATCGTTGTTATGGAGTTGTATCCTGGTTTTGCTTTATATCGTGGGCTATATGAGTTTTCGCAATATGCCTTTAGTGGGGATGCTTTGGGGAGCGATGGTATGCGCTGGAGCGATCTGAGTGATAGCACAAATGGCATGAAGGAGGTCTTAATTATCATGTTCGTGGAGTGGCTATTGGTGCTTTTGTTTGCTTATTATATCGATCAAGTTTTGTCTTCAGGAAGCAGGAAAAGTCCTCTTTTTTTCTTGAAAAGATTTCAGAAAAAGCCTCATTCATCTTTTCGGACGCCTAGTATCCAAAGGCAAAAATCTAAGGTTTTTGTTCAGATAGAGAAACCTGATGTCACTCAAGAGAGGGAGAAGGTGGAGCAACTGCTACTTGAACCGACTATTAATCAAGCAATTGTATGCGACAACATGAGAAAAGTCTATCCGGGGAGGGATGGCAACCCGGAGAAACTTGCAGTGAGAGGGTTGTCCCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAATATGATGATTGGTCTCACCAAGCCAACCTCTGGTACCGCATTTGTTCAAGGTCTTGACATAAGAACTCATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAATCCCTAACAGGAAGAGAGCACCTACTCTTTTACGGCAGACTTAAAAATCTTAAAGGTTCAGCCTTAACACAAGCAGTGGAAGAATCGTTGAAAAGTGTAAACCTTTTTAATGGAGGAGTTGCTGATAAACAAGCTGGAAAATACAGTGGAGGAATGAAGAGGAGGCTTAGTGTCGCAATTTCATTGATTGGAGATCCTAAAGTTGTTTATATGGATGAACCAAGTACTGGATTAGACCCTGCATCAAGAAACAACTTATGGAATGTTGTTAAGCGTGCAAAACAGGATCGTGCAATCATTCTTACCACACATTCCATGGAAGAAGCAGAAGTCCTATGTGATCGATTAGGAATATTTGTAGACGGGGGCTTGCAGTGCATAGGCAATCCAAAGGAGTTGAAAGCCAGGTATGGAGGAACATATGTCTTCACAATGACAACATCTATGGATCATGAAAAGGATGTAGAGAATTTGGTGAGGCAACTCTCACCAAATGCTAACAAGATCTACCATATCTCTGGCACCCAAAAGTTCGAGCTACCAAAGGATGAGGTTAAAATAGCAAATGTATTCCAAGCTGTTGAAACTGCAAAGAGAAGCTTCACCGTTTCAGCGTGGGGTTTAGCTGATACCACACTGGAAGATGTCTTCATTAAAGTTGCACGTGGGGCTCAGGCATTTGACACCTTGTCATAA 2853 0.4182 MENGNTANEPASFWTQANALLRKNLTFQKRNVKTNVRLIMSPFILCLLLVLLQSLVENQLDKAENKCGCVCVRRQGDTCLEEECGVEHSDLDQVATCPIPSPPEWSPLLQVPAPQYRAVRTDYFPFSDFPNSSCRRNGSCPVTMFFTGTNQSFGEIISRNMIPSNLSSINSSDITASLASNVVGSDSEPENTNFLEPAFFSDLPIYYLQNQCTQNSTFSVSLQIAGISKQQEVICAQGLRLWRNSSSEVNNELYKGYRRSNTERQINEIAAGYDFLNSNRSIFNVSIWYNSTYKNDTGFNQIALARIPRSVNLVSNAYLQFLLGPGTKMFFEFVKEMPKPETPIKFDLASLLGGLFFTWVILQLFPIALTSLVYEKQQNLRIMMKMHGLGDGPYWMISYGYFLAISIVYMLCFVIFGSVIGLNFFTMNDYSIQFVFYFIYINLQISLAFLLASLFSNVKTATVLAYIGVFGTGLLAGFLFQFFVQDTSFPRGWIVVMELYPGFALYRGLYEFSQYAFSGDALGSDGMRWSDLSDSTNGMKEVLIIMFVEWLLVLLFAYYIDQVLSSGSRKSPLFFLKRFQKKPHSSFRTPSIQRQKSKVFVQIEKPDVTQEREKVEQLLLEPTINQAIVCDNMRKVYPGRDGNPEKLAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTHMDGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFNGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGGLQCIGNPKELKARYGGTYVFTMTTSMDHEKDVENLVRQLSPNANKIYHISGTQKFELPKDEVKIANVFQAVETAKRSFTVSAWGLADTTLEDVFIKVARGAQAFDTLS* 951
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1610 950 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524
Gso6g1610 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 868 IPR027417 -
Gso6g1610 950 SMART AAA_5 658 842 IPR003593 -
Gso6g1610 950 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 628 865 IPR003439 GO:0005524
Gso6g1610 950 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 9 950 IPR026082 GO:0016021|GO:0055085|GO:0140359
Gso6g1610 950 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 9 950 - -
Gso6g1610 950 Pfam ABC-2 family transporter protein 347 559 - -
Gso6g1610 950 Gene3D - 620 892 IPR027417 -
Gso6g1610 950 Pfam ABC transporter 650 794 IPR003439 GO:0005524
Gso6g1610 950 CDD ABC_subfamily_A 632 853 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso6g1610 Gso-Chr6 16875753 16885483 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1610 604 876 Calmodulin-binding Proteins AT2G36910 22.028 5.10e-12 68.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1610 - - gmx:100805474 1882.84
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1610 6 16875753 16885483 Gso6g1610 6 16875753 16885483 ECH
Gso4g1445 4 42640667 42648714 Gso6g1610 6 16875753 16885483 GST