Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1609 ATGGCAACCACTCTCACCGGCATCTCGCTGGTGGCGCTGCAATTCAAGGCCTTGCTGAAGAAAAATCTCTTGCTGTCATGGCGGAACAAGAGAGCCAGCCTCTTACAGTTACTCTCCCCTCTCATATTCATTTTCCTCATCTTCGCAATCGACAAGGCCATCAAGGCACAGACCTCGACCTCCTCCTCCTACAAGAGCGTCACTGACCCTCCCATGGAACCTTCTCCCCCCATCACTCCCTGCGAGGACAAGTTCTTCATCAAACTCCCCTGCTACGACTTCGTCTGGAGCGGCCACGCCAGCCCCACGTTCCAGACCATCGTCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAACCCTATGCGGTGCCCTGGAGCGCTTCATTTTTCGGAGAGGAACGACACCGTTATAAGCTACGGTCTTCAGACCAATTCCACCAGTCTTCAGCGGCGAGGGAAGTACGAGGATCCCACGGCTTCGTTTCAGCTCCCTCTTCAGCTTGCTGCCGAGAGGGAAATTGCCAGATACCTTATTGGAGATGCGGATTTCAGTTGGAATGTGTTTCTGAGGGAATTCGCGCACCCTTCCATGAATCCTTTCTCTGCTGTGGCTTCAATTGGTCCTGCATTTTTCCTCGCGATCGCCATGTTTAATTTTGTTCTTCAGATTAGCTCTTTGGTGACGGAGAAAGAGCTTAAACTTCGCCAGGCAATGAATATGATGGGGCTTTACGACTTTGCTTACTGGTTTTCCTGGCTCATCTGGGAGGCAGTTGTCACAATCCTATCGTCCCTCCTCATAGTTCTCTTTGGAATGATGTTCCAGTTTCGCTTTTTCTTGGATAACAGTTTTGTGGTTCTGTTCGTTCTGTTCTTCCTGTTTGAACTTAATATGACTGGCTTGGCCTTCATGATATCTGCTTTCATTCGGAAATCATCTTCGGCAACAACAGTGGGGTTCTCTATATTTATTGTCGGCTTTGTGACTCAGCTTGTGGTACAACAAGGATTTCCTTACACAGATAGCTTCTCCAAAACTATACGAAACGTGTGGTCGTTATTCCCTCCCAATCTTTTTGCTCAAGGTATAAAAGTGCTTTCAGATGCAGTTGCAACTTCTGAAGACAAAGGCATTAGCTGGAGTAAACGGGGAGAATGTGCTCTTAATGATTCAGACTGTGTGATAACTATTGATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCAGGTGTGAGGAAATCAATATTGTACTTTCTAAATCCCAGTTATTGGATGGGAAAAGGAGGTCAAAAAGTGAAAGAGGGTGGGGTTTGTAGCTGTATAGGTTCAGCCCCACGTCAAGAACAAAGTACACCAGATGATGAGGATGTCCTTGAAGAAGAAAACAAAGTGAAACAGCAACTAACAGAAGGTCTTCTTGATGCAAATGTTGCTGTTCAGATACGTGGCCTTGCAAAGACATATCCTGGCACACGTAGCATTGGTTGCTGCTTTAAATGTAAAAGAACTTCACCTTACAATGCAGTTAAGGGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCCAATGGAGCTGGAAAAACTACAGCTATTAATTGCTTGACAGGGGTAACTCCAGTAACTGATGGAGATGCGTTGATTTATGGGCATTCAATCAGAAGTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTCTGTCCACAGTTTGATATCCTATGGGATGCACTGTCTGGTCAGGAACACCTCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCAATTACCCAGACTTCATTAGCAGAGGTAAGACTCACGGATGCAGCCAAAGTGAGAGCTGGAAGTTACAGCGGAGGAATGAAACGCCGTCTCAGTGTTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAAATGCAAAGAGAGGGCGTGCCATTGTTCTTACAACGCACTCTATGGAAGAAGCTGACATTCTAAGTGACCGTATAGGAATCATGGCAAAAGGAAGTCTTCGCTGCATTGGCACCTCAATCAGATTGAAGTCCCGCTTTGGTACTGGTTTTATTGCTAATATCAGCTTCAATGGAAACAATATCGAACATAGTCCTGCCAATGGAGATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACGAATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGATATCCAGCTTGGTCTAACAACGCTCGAAGAAGTTTTCTTGAATATTGCTAGACAAGCAGAGCTAGAAAGTGCTGCAGCTGAAGGGAGACTAGTGACCCTGACCTTAACATCTGGGGAATCTGTGCAGATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAAAACCCTACTGGGTTTATGGTAGAAGTATACTGGGAACAAGATGATACTGGTGCCTTATGCATTGCTGGCCACTCACAGAAGGTTCCTATTCCTAATGGCGTTCAACTATCTTCTTCTCCATCTGTAAGACACCGTAGATATTTAGGCCGGTCAGGAACAGTTCATGGGGTTGTGATTGATCCAAGTCAAGTTAGTTCAGTAGCTTTTCAGTGA 2904 0.4518 MATTLTGISLVALQFKALLKKNLLLSWRNKRASLLQLLSPLIFIFLIFAIDKAIKAQTSTSSSYKSVTDPPMEPSPPITPCEDKFFIKLPCYDFVWSGHASPTFQTIVARIMNNNPGRPIPPSKVKSFKEKSEVDAWLLSNPMRCPGALHFSERNDTVISYGLQTNSTSLQRRGKYEDPTASFQLPLQLAAEREIARYLIGDADFSWNVFLREFAHPSMNPFSAVASIGPAFFLAIAMFNFVLQISSLVTEKELKLRQAMNMMGLYDFAYWFSWLIWEAVVTILSSLLIVLFGMMFQFRFFLDNSFVVLFVLFFLFELNMTGLAFMISAFIRKSSSATTVGFSIFIVGFVTQLVVQQGFPYTDSFSKTIRNVWSLFPPNLFAQGIKVLSDAVATSEDKGISWSKRGECALNDSDCVITIDDIYKWLAATFFLWFVLAIYFDNIIPNASGVRKSILYFLNPSYWMGKGGQKVKEGGVCSCIGSAPRQEQSTPDDEDVLEEENKVKQQLTEGLLDANVAVQIRGLAKTYPGTRSIGCCFKCKRTSPYNAVKGLWVNFAKDQLFCLLGPNGAGKTTAINCLTGVTPVTDGDALIYGHSIRSSTGMSNIRKLIGVCPQFDILWDALSGQEHLQLFATIKGLSPASIKSITQTSLAEVRLTDAAKVRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKRGRAIVLTTHSMEEADILSDRIGIMAKGSLRCIGTSIRLKSRFGTGFIANISFNGNNIEHSPANGDAISTERREAVKKFFKNHLDVVPKEENHNFLTFVIPHDREALMTNFFSELQDREEEFGISDIQLGLTTLEEVFLNIARQAELESAAAEGRLVTLTLTSGESVQIPIGARFVGIPGTESAENPTGFMVEVYWEQDDTGALCIAGHSQKVPIPNGVQLSSSPSVRHRRYLGRSGTVHGVVIDPSQVSSVAFQ* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1609 967 ProSitePatterns ABC transporters family signature. 666 680 IPR017871 GO:0005524
Gso6g1609 967 Pfam ABC-2 family transporter protein 33 439 - -
Gso6g1609 967 SMART AAA_5 557 741 IPR003593 -
Gso6g1609 967 Gene3D - 509 776 IPR027417 -
Gso6g1609 967 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 518 764 IPR003439 GO:0005524
Gso6g1609 967 Pfam ABC transporter 551 693 IPR003439 GO:0005524
Gso6g1609 967 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 542 746 IPR027417 -
Gso6g1609 967 CDD ABC_subfamily_A 518 752 - -
Gso6g1609 967 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 9 934 IPR026082 GO:0016021|GO:0055085|GO:0140359
Gso6g1609 967 PANTHER ABC TRANSPORTER A FAMILY MEMBER 1-RELATED 9 934 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1609 Gso-Chr6 16859756 16866243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1609 561 763 Calmodulin-binding Proteins AT2G36910 23.944 1.45e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1609 - - gmx:100786538 1861.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1609 6 16859756 16866243 Gso6g1609 6 16859756 16866243 ECH
Gso4g1446 4 42657716 42664279 Gso6g1609 6 16859756 16866243 GST