Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1608 ATGGGGAAATCACCAGGAAAATGGATCAAAACCGTACTATTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGAAGAGAGAAGATTGTCAATAAAAAAGCAGTTGTTGCTTCCAACGAGTTGGAAAATGGTTTGTCCTTAGATCCAACCCCCAATGAGATTGCTACAAAGGAGGAGGACCTTGAACTGGAGAATGAAGAATCAGAAAATATTTTACCTGAGAATCAAGAAAGAGACATTAATGGATCTGTTGATCCGGATGCACCACCTGATCCAGAGAAAATCAGGCAGGAGGAAGCAGCAACAAAGGCACAAGCTGCTTTCAGGGGTTACTTGGCACGCAGGGCATTTAGGGCCCTAAAAGGCATCATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAGACAAGCTGTTGTTACATTATGCTGCATGTATGGAATTGTAAAGTTACAAGCACTTGTTCGTGGAGGAAGGATTAGACAGTCTAATGTTGGATTTGAAATCCATGAGAAGTGCAATCTATTTAAGCCTCTGGATGGAAAACTTGGTGAGCCAGTTGGTATCTCCACAAAAATTTCAAAGCTGTCTGCAAATACTTTCATCCGTAAGCTTGTTGCTTCATCAATTACAATAATGGCCCTGCGCCTGCAATATGTTAGTGGAGATCCAAATTCAGTCTTAAGCTGGTTGGAACGCTGGTCCGCATCTTACTTCTGGAAACCAGTTCCCCAACCCAAGAAAATTCGAGACTCTAAATCTCATAGAAAGCATGGTAATATTTCAAATGGAGAAGCTCAAATTACCAAGTCAAAACGCACTACCAGGAAGCTTCCTATTGCAAATTTTGAACCAGCCCTGGTGCAAACAAATCCTGAATTCGAGAAACCAAAACGTAATTTCAGAAAAATACCACACCAAGTGTTGGATCCAGAGCTAGAAAATCCTCAAAGTGAGCTTGAAAAGGTTAAACGTAGCTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGCTGTTCAGCCAGAAGTTGAAATTGAGACCCCAAAGGAGCATTTGGAAATAGCAACAGTTATTCCAAGTCACGCTGTTTCAGAACAAGCAATCATTACTCCTGATGACAAGATCGAGCAAGAAGAAACTTTAACCATCTTCAATGTGCCAGATGTCGAAATTTCTCCAAGACCATCAGTTAACATGGAAGTGTATGACATTCCTAGCAATTATCAAGTGTCTGTAGAATCAAAGCCCTTGTCAGAGACTCCAATTAAAGATAGAAACACATCTCACGGAAAAGTTAAAAATGAGCTAGGCAATCTACCAGAGACTATTTTCAAAGATGAAAACTCCCTATTAACAAATGGAGATTTGAGCTATAATGATCTGACAGGTAATGAAAACCAGAAACCTACACGTAAAGCCTCAAATTTGACGAAGCAGGAGAATGGAGATGATGGCTTAAAGAATAGTCCAAAATTACCAAGTTATATGGCAGCAACTGAATCTGCCAAGGCAAAGTTGAGGGCACAAGGGTCCCCAAGGTTTGGACAAGATGAAACTGAGAAAAACAACACTGCTGGTTCTGGGAGACATTCTCTGCCCTCTTCAACTAACAAGAAGATTAGTTCATATTCACCTAAGACACAGAGATCAGTTCCAGCAGGTGGCAAGGGGGGAAACAAAAGTGACAGAACAGTACCATCTTCTAAGGCAGGGAATGGGAAGGTAATTCAAGCAGAGTGGAGGAGGTGA 1755 0.4103 MGKSPGKWIKTVLFGKKSSKSNISKGREKIVNKKAVVASNELENGLSLDPTPNEIATKEEDLELENEESENILPENQERDINGSVDPDAPPDPEKIRQEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCCMYGIVKLQALVRGGRIRQSNVGFEIHEKCNLFKPLDGKLGEPVGISTKISKLSANTFIRKLVASSITIMALRLQYVSGDPNSVLSWLERWSASYFWKPVPQPKKIRDSKSHRKHGNISNGEAQITKSKRTTRKLPIANFEPALVQTNPEFEKPKRNFRKIPHQVLDPELENPQSELEKVKRSLRKIHNPVVENAVQPEVEIETPKEHLEIATVIPSHAVSEQAIITPDDKIEQEETLTIFNVPDVEISPRPSVNMEVYDIPSNYQVSVESKPLSETPIKDRNTSHGKVKNELGNLPETIFKDENSLLTNGDLSYNDLTGNENQKPTRKASNLTKQENGDDGLKNSPKLPSYMAATESAKAKLRAQGSPRFGQDETEKNNTAGSGRHSLPSSTNKKISSYSPKTQRSVPAGGKGGNKSDRTVPSSKAGNGKVIQAEWRR* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1608 584 SMART iq_5 120 141 IPR000048 GO:0005515
Gso6g1608 584 SMART iq_5 97 119 IPR000048 GO:0005515
Gso6g1608 584 Pfam Protein of unknown function (DUF4005) 481 563 IPR025064 -
Gso6g1608 584 PANTHER PROTEIN IQ-DOMAIN 31 1 572 - -
Gso6g1608 584 MobiDBLite consensus disorder prediction 457 485 - -
Gso6g1608 584 MobiDBLite consensus disorder prediction 457 584 - -
Gso6g1608 584 Pfam IQ calmodulin-binding motif 100 119 IPR000048 GO:0005515
Gso6g1608 584 Pfam IQ calmodulin-binding motif 122 139 IPR000048 GO:0005515
Gso6g1608 584 PANTHER IQ-DOMAIN 5-RELATED 1 572 - -
Gso6g1608 584 MobiDBLite consensus disorder prediction 41 96 - -
Gso6g1608 584 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
Gso6g1608 584 MobiDBLite consensus disorder prediction 517 551 - -
Gso6g1608 584 MobiDBLite consensus disorder prediction 414 436 - -
Gso6g1608 584 Gene3D - 96 144 - -
Gso6g1608 584 ProSiteProfiles IQ motif profile. 122 144 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1608 Gso-Chr6 16851386 16858013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1608 1 584 IQD Protein Family AT1G74690 43.750 5.23e-124 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1608 - - gmx:100786022 1135.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1608 6 16851386 16858013 Gso6g1608 6 16851386 16858013 ECH
Gso2g0168 2 1782065 1789084 Gso6g1608 6 16851386 16858013 ECH
Gso4g1447 4 42671089 42678030 Gso6g1608 6 16851386 16858013 GST