Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1605 ATGGAGTTTGGTTCAGAAAGATCTGGTCATGAAGTCAAGGATGAGAAGAGAAGTGAATCTAGTGTTGGAGATGAAGAAGATCGTCGTGAACAAGAGATTGTTACGCAGGAGCCACCCCTGTCTACTACCGAAAGATCCACAGTGGAGGCTGGGCCAAATGCTTCTTCCCTAACCAAAAAGGAAGAGGCTGTTGATGAACTTGAAGTTGCCAAAGCCGAAATGGGTGAAGTGATGGAAGAAAACCAACGACTAAAGACGTGTTTGAACCGAATACTGAACGATTACCGCGCACTCCAAATGCAATTCCACAACATAGTTGAACAAGAGACAAAAGATTCTTCTGATCAGAAAGTGAACAACAACAATGACCAATATCAAATAGATGAATCAAACCTAGTTTCCCTCAGTCTTGGAAGACTTCCAACAAGAAACAATAATAAAGTCCCTAATAATAAACCATTGAAAGAGGAAGCAGAAAAAGAAGATAAAGAAGGCTTGTCCCTTGGATTAGACTGCAAATTTGAAACATCAAAATCTGGAATAAGCACAACTGAATATTTGCCAATTCATCAAAGCCCTAATAATAGTGTTGAAGAAGTGCCAAAGGAAGAAGCAGCTGGTGAGAGTTGGCAACCTGGCAAGGGAATAAAGACAGCTAGAGATGCTACAGGAGAGGATGAAGTTTCTCAACAAAATCCAGCAAAGAAAGCAAGGGTTTGTGTGAGGGCAAGATGTGACACTCCAACTATGAACGATGGATGTCAATGGAGGAAATATGGACAGAAGATTTCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACGGTTGCACCATCATGCCCAGTAAGAAAGCAGGTGCAAAGATGTGCACAAGACATGTCCATATTATTCACCACCTACGAAGGCAACCACAACCACCCTCTTCCACTCTCAGCCACAGCCATGGCCTCCACCACTTCAGCAGCTGCATCCATGCTATTATCCGGCTCATCAACCTCACACTCCGGAACAAGGCCTTCCACAGCCATGACCACCGCAGATCTTCATGGAATGAACTTCTTCCTATCAGACGGTTCCAAATTATCAAAGCAATACTACCTGTCCCATCCTGCAGCACTCTCATCTTCACCTTCACACCCCACCATCACTCTTGACCTAACTTCCAATAATAATCCATCCTCATCATCTTCTGCTGCTCTTGTTAAATTCACTTCAAACTCAAACTACAATAACACACAAAGGTACCCTCTTTCCACAAGCTTAAACTTCAGTTCCTCAGAATCCAACAATGCAACAACTTCTTGGAGCAATAATGGGTTCCTCAGCTACAACAACACTCTACCATATAATAGCAATAGGAATGTGACAAATGTCCTTAGCAACATAAACCTTGGAAGACAACAACAACAACCAATGGAAAACATCTACAACTCCTACATGCAAAGGAACAACAATGTTCCAATCTCTCCACCACAACATTCTCTGCCAGATACCATAGCTGCAGCGACAAAAGTAATCACTGCAGACCCCAATTTTCAATCAGCTTTGGCAGCAGCACTTACAACAATTATTGGTTCTGGAAGCACTACTCAAGGAAACCATGGTGGTGCAGGGGAAAATCTGAGTCAGAAAATGAAATGGGGTGAACTGTTTCCTTCATCTTCTTCTGCATTACCTTCATCTTCAACAAAAGTCAATGGTTGTGCATCAAGCTTCTTGAACAAATCAGCCGCTAATACACAACCAGGAACAGCTTTGATGTTTCTTCAGCCACCTTTGCCTCTTTCTAGCCCCAAAAGCGCTTCTGGGTCTCCAGGAGATCATATAGACAAGAGAAATTGA 1848 0.4286 MEFGSERSGHEVKDEKRSESSVGDEEDRREQEIVTQEPPLSTTERSTVEAGPNASSLTKKEEAVDELEVAKAEMGEVMEENQRLKTCLNRILNDYRALQMQFHNIVEQETKDSSDQKVNNNNDQYQIDESNLVSLSLGRLPTRNNNKVPNNKPLKEEAEKEDKEGLSLGLDCKFETSKSGISTTEYLPIHQSPNNSVEEVPKEEAAGESWQPGKGIKTARDATGEDEVSQQNPAKKARVCVRARCDTPTMNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCAQDMSILFTTYEGNHNHPLPLSATAMASTTSAAASMLLSGSSTSHSGTRPSTAMTTADLHGMNFFLSDGSKLSKQYYLSHPAALSSSPSHPTITLDLTSNNNPSSSSSAALVKFTSNSNYNNTQRYPLSTSLNFSSSESNNATTSWSNNGFLSYNNTLPYNSNRNVTNVLSNINLGRQQQQPMENIYNSYMQRNNNVPISPPQHSLPDTIAAATKVITADPNFQSALAAALTTIIGSGSTTQGNHGGAGENLSQKMKWGELFPSSSSALPSSSTKVNGCASSFLNKSAANTQPGTALMFLQPPLPLSSPKSASGSPGDHIDKRN* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1605 615 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 21 610 IPR044810 GO:0003700
Gso6g1605 615 SUPERFAMILY WRKY DNA-binding domain 243 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g1605 615 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 21 610 - -
Gso6g1605 615 Coils Coil 60 80 - -
Gso6g1605 615 MobiDBLite consensus disorder prediction 204 233 - -
Gso6g1605 615 MobiDBLite consensus disorder prediction 1 63 - -
Gso6g1605 615 MobiDBLite consensus disorder prediction 139 163 - -
Gso6g1605 615 MobiDBLite consensus disorder prediction 35 54 - -
Gso6g1605 615 Gene3D WRKY domain 234 312 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g1605 615 SMART WRKY_cls 250 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g1605 615 MobiDBLite consensus disorder prediction 585 615 - -
Gso6g1605 615 MobiDBLite consensus disorder prediction 1 34 - -
Gso6g1605 615 ProSiteProfiles WRKY domain profile. 245 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g1605 615 Pfam WRKY DNA -binding domain 251 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1605 Gso-Chr6 16793083 16798205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1605 74 533 WRKY Transcription Factor Family AT5G15130 41.116 9.96e-82 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso6g1605 WRKY 3.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1605 - - gmx:100804403 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1605 6 16793083 16798205 Gso6g1605 6 16793083 16798205 ECH
Gso19g0180 19 2236646 2240042 Gso6g1605 6 16793083 16798205 ECH
Gso2g0174 2 1817996 1826164 Gso6g1605 6 16793083 16798205 ECH