Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1600 ATGGCGGCTGGAACTGTCTTCTGCGCTGCTGCTACTGCTGCTTCTAATTTGACAACAACCACTTTTCTTCACAACCAAACACCTCCTTCCACCTCCTCTCAGCCTCCTCTCGATTCTCTTTTCCTCTCTGCCTCTTCCCCTTTCCTCGGTTCAAGATCTATAGTGAGTTTTGGAGATGTTCAAGGAGGGAAGGGGTGCAATGATTCATTCTTCCGCCCCTATGATGAGAATGGGGATGAGGACATGGACGAGTACTTCCACCAGCCTGAGAAGAAGCGCAGGCTCTCCGTGGAGCAAGTGAAGTTTCTTGAGAAGAGCTTTGATGAGGAGAACAAGCTCGAGCCCGAGAGGAAGATTTGGCTAGCCAAGGAACTCGGCTTGCAGCCTAGGCAGGTGGCGATTTGGTTTCAGAACCGCCGCGCGCGCTGGAAGACCAAGCAGATGGAAAAGGACTATGATTCCCTGCAGGCTAGTTACAATGATCTCAAGGCTAACTATGACAACCTTCTCAGGGAAAAGGATAAACTCAAAGCTGAGGTGGCAAGGCTCACTGAGAAGGTGCTTGGAAGAGAGAAAAATGAGAGTCACTTGGAACAGGCTGAAACCAACGGATTGCAGGAGCCGCTGCACAAGTCTTTGGTTGATTCAGCTTCTGAGGGTGAAGGGTCCAAAGTGACCTTTGAGGCTTGTAAACAGGAGGACATTAGCTCAGCCAAGAGTGACATATTTGATTCATCAGAAAGCCCACAATACACTGATGGAGTTCACTCTGCACTTCTAGAGACTGGTGATTCTTCTTATGTGTTCGAACCTGATCGATCTGATGTGTCTCAGGATGAAGAAGATAACTTGAGCAAGACCCTTCTGCCTCATTACATTTTTCCCAAGCTTGAAGATGTTGATTACTCCGACCCACCTCATGGTTCATGTAATTTTGGAATTCCGGAGGAAGATCAAGCCATTTGGTCTTGGCCTTACTGA 981 0.4822 MAAGTVFCAAATAASNLTTTTFLHNQTPPSTSSQPPLDSLFLSASSPFLGSRSIVSFGDVQGGKGCNDSFFRPYDENGDEDMDEYFHQPEKKRRLSVEQVKFLEKSFDEENKLEPERKIWLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLQASYNDLKANYDNLLREKDKLKAEVARLTEKVLGREKNESHLEQAETNGLQEPLHKSLVDSASEGEGSKVTFEACKQEDISSAKSDIFDSSESPQYTDGVHSALLETGDSSYVFEPDRSDVSQDEEDNLSKTLLPHYIFPKLEDVDYSDPPHGSCNFGIPEEDQAIWSWPY* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1600 326 Pfam Homeobox associated leucine zipper 146 187 IPR003106 GO:0006355|GO:0043565
Gso6g1600 326 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 26 323 IPR045224 GO:0003700
Gso6g1600 326 Gene3D - 141 189 - -
Gso6g1600 326 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 26 323 - -
Gso6g1600 326 SUPERFAMILY Homeodomain-like 78 148 IPR009057 -
Gso6g1600 326 CDD homeodomain 91 147 IPR001356 GO:0003677
Gso6g1600 326 Gene3D - 94 140 - -
Gso6g1600 326 Coils Coil 145 193 - -
Gso6g1600 326 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Gso6g1600 326 Pfam Homeodomain 91 144 IPR001356 GO:0003677
Gso6g1600 326 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Gso6g1600 326 PRINTS Lambda-repressor HTH signature 117 126 IPR000047 GO:0003677
Gso6g1600 326 PRINTS Lambda-repressor HTH signature 126 142 IPR000047 GO:0003677
Gso6g1600 326 SMART HOX_1 89 150 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1600 Gso-Chr6 16736608 16739166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1600 89 205 Homeobox Transcription Factor Family AT3G01470 62.185 8.26e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso6g1600 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1600 - - gmx:732618 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1600 6 16736608 16739166 Gso6g1600 6 16736608 16739166 ECH
Gso4g1457 4 42981892 42984331 Gso6g1600 6 16736608 16739166 GST