Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1598 ATGGGTCATGCAGTGTTGATTTTGGTGGTGGTGATTTCCAGCATTGTGTTATGCCCTTCTTCTCTTGCTCTAACGCAAGACGGATTGACATTGTTGGAGGTCAAAAGCACTTTGAATGACACAAGGAATTTTCTCAGCAACTGGAGAAAGTCTGGTGAAACTCACTGTACATGGACTGGTATCACTTGTCATCCTGGGGAACAACGAGTTCGCTCAATAAATTTACCTTACATGCAGCTGGGGGGGATTATATCTCCCAGCATTGGCAAACTCAGTAGACTGCATAGACTGGCACTTCATCAAAATGGCTTACATGGAATTATTCCAAACGAAATTAGCAATTGTACTGAGCTTAGAGCACTGTACTTGAGAGCTAATTATTTACAAGGAGGCATCCCATCAAATATTGGAAATCTTTCCTTTTTGCATGTATTGGATTTATCAAGCAACTCATTGAAGGGTGCTATACCTTCTTCTATTGGCCGTCTTACACAGTTGCGAGTTCTGAACTTGTCAACAAATTTCTTTTCTGGCGAAATCCCTGACATTGGAGTACTGAGCACCTTTGGGAACAATGCGTTTATTGGGAATTTAGATCTTTGCGGGAGGCAAGTTCAGAAACCATGCCGGACATCACTTGGTTTCCCAGTGGTGCTACCACATGCTGAAAGTGATGAAGCTGAAGTCCCTGACAAAAGATCTTCACATTATGTGAAATGGGTGCTAGTTGGTGCAATAACTATAATGGGCCTTGCACTTGTTATGACACTTTCATTACTATGGATTTGTTTGCTATCAAAGAAGGAAAGAGCTGCCAGGAGATACATAGAAGTGAAGGATCAAATCAATCCAGAATCAAGTAGGAAGAATGACGGTACAAAACTCATCACATTCCATGGTGATCTGCCGTACACATCATTGGAGATCATTGAAAAGTTGGAGTCTCTTGATGAAGATGATGTGGTAGGGTCTGGAGGATTTGGTACCGTTTACCGAATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGCGGATTGATAGAAGCCGTGAAGGTTCTGATCAGGGTTTCGAAAGGGAACTAGAAATATTGGGTAGTATCAAGCACATTAATCTAGTTAACCTGCGTGGTTACTGCAGACTCCCTTCTACTAAGCTTCTAATCTATGATTATTTGGCCATGGGAAGTTTAGATGATCTCTTGCATGAAAATACTGAGCAATCACTGAATTGGAGTACTCGCCTAAAGATAGCCCTCGGTTCTGCCAGGGGATTGACTTACTTGCACCATGACTGCTGCCCGAAAATCGTGCATCGCGACATAAAATCCAGCAACATCCTTCTTGATGAGAACATGGAGCCTCGTGTCTCTGATTTTGGTCTTGCAAAACTTTTGGTAGATGAAGATGCCCATGTTACAACAGTGGTTGCTGGCACATTTGGCTATCTAGCACCAGAGTATCTACAAAGTGGGAGAGCCACTGAGAAGTCAGATGTTTATAGTTTTGGAGTTCTATTGCTAGAACTTGTAACAGGAAAGAGACCTACAGATCCTTCCTTTGCAAGCAGAGGTGTAAATGTAGTTGGCTGGATGAACACATTCCTCAAAGAAAATAGATTGGAAGATGTAGTAGACAAAAGATGCATTGATGCAGATTTGGAATCTGTTGAAGTAATTCTTGAACTAGCAGCAAGTTGCACTGATGCAAACGCGGATGAACGTCCGTCGATGAACCAAGTGTTACAGATACTGGAACAAGAGGTTATGTCTCCATGCCCAAGTGATTTTTATGAGTCACAATCAGATCACTGTTAA 1815 0.4198 MGHAVLILVVVISSIVLCPSSLALTQDGLTLLEVKSTLNDTRNFLSNWRKSGETHCTWTGITCHPGEQRVRSINLPYMQLGGIISPSIGKLSRLHRLALHQNGLHGIIPNEISNCTELRALYLRANYLQGGIPSNIGNLSFLHVLDLSSNSLKGAIPSSIGRLTQLRVLNLSTNFFSGEIPDIGVLSTFGNNAFIGNLDLCGRQVQKPCRTSLGFPVVLPHAESDEAEVPDKRSSHYVKWVLVGAITIMGLALVMTLSLLWICLLSKKERAARRYIEVKDQINPESSRKNDGTKLITFHGDLPYTSLEIIEKLESLDEDDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQGFERELEILGSIKHINLVNLRGYCRLPSTKLLIYDYLAMGSLDDLLHENTEQSLNWSTRLKIALGSARGLTYLHHDCCPKIVHRDIKSSNILLDENMEPRVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFASRGVNVVGWMNTFLKENRLEDVVDKRCIDADLESVEVILELAASCTDANADERPSMNQVLQILEQEVMSPCPSDFYESQSDHC* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1598 604 SMART serkin_6 316 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1598 604 SUPERFAMILY Protein kinase-like (PK-like) 293 585 IPR011009 -
Gso6g1598 604 PANTHER LRR RECEPTOR-LIKE KINASE 5 603 - -
Gso6g1598 604 PANTHER RECEPTOR-LIKE PROTEIN 55 5 603 - -
Gso6g1598 604 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Gso6g1598 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Gso6g1598 604 ProSiteProfiles Protein kinase domain profile. 316 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1598 604 SUPERFAMILY L domain-like 25 208 - -
Gso6g1598 604 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Gso6g1598 604 Gene3D Phosphorylase Kinase; domain 1 279 391 - -
Gso6g1598 604 Gene3D Transferase(Phosphotransferase) domain 1 392 594 - -
Gso6g1598 604 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Gso6g1598 604 Pfam Protein kinase domain 319 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1598 Gso-Chr6 16717441 16722285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1598 23 593 Receptor kinase-like Gene Family AT2G35620 49.387 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Gso6g1598 Pkinase 8.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1598 - - gmx:100783363 1177.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1598 6 16717441 16722285 Gso6g1598 6 16717441 16722285 ECH
Gso4g1459 4 43026072 43030970 Gso6g1598 6 16717441 16722285 GST