Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1595 ATGGGCATGGACTACTACAACATACTCAAAGTGAATCGCAACGCCAGCGACGACGATTTGAAGAAAGCCTACAAGAGACTCGCGCGTATATGGCACCCTGACAAGAACCCCGTCAACAAGACCGAAGCCGAGGCCAAATTCAAACGAATCTCCGAAGCCTACGACGTTCTCAGCGACCCGCAGAAGCGTCAGATCTACGATCTCTACGGCGAGGAGGCGTTGAAATCGGGGCAGTTTCCCCCACCCCCGCAGTCCTCGTCCTCGTCGTCCTCGCGCGCCTTCCACCACCACCACCACCACCACCGCCAGAACAACAACCCTCCCCCGGCCTCGGCCTCGTCGTTCCGATTCAACCCGCGCGACGCCGACGACATCTACGCCGAGTTTTTCGGCCCGGACGACATCGGCGCCGGTGCCTCGTCCCGCCGAGGCGGCGGCCCGGACGCCTTCTTCCGGACCTCCAACGGCGGAGGCGCCGCGTTCAGCGCCTCCGCCGCTGCAGGACGGAAGGCCGCCGCGGTGGAGAACGCGCTCCCGTGCAGCTTGGAGGACCTCTACAAAGGAGTCAAGAAGAAGATGAAGATTTCCAGGAACGTCTACGACGCTTTTGGCAAATGTGGGGATGTGGAGGAGATTTTGACTATCGAGATAAAACCTGGCTGGAAGAAAGGAACAAAAATTACCTTCCCAGAGAAAGGTAACCGTGAGCCTGGTGTCATCCCAGCAGATCTCATTTTTGTGATAGATGAGAAGCCGCATGCTCTTTATAGAAGGGATGGTAATGATTTGGTGATCAACCAAGAGATAACCCTTCTTGAGGCCCTTACTGGTAAAACGTTGGATCTCACCACCTTGGACGGAAGGAGTCTCATGATCCCATTGACAGATATTGTCAAACCTGGTGCTGAGGTTGTTGTCCCTAATGAAGGAATGCCTATATCAAAAGAGCCTGGGATGAAGGGGAATTTGAGAGTTAAGCTTGACGTCAAGTATCCTTCAAGGCTAACTCCAGAGCAGAAGTCTGATCTGAGGAGAGTTTTAGGTGGAATCTCATGA 1056 0.5464 MGMDYYNILKVNRNASDDDLKKAYKRLARIWHPDKNPVNKTEAEAKFKRISEAYDVLSDPQKRQIYDLYGEEALKSGQFPPPPQSSSSSSSRAFHHHHHHHRQNNNPPPASASSFRFNPRDADDIYAEFFGPDDIGAGASSRRGGGPDAFFRTSNGGGAAFSASAAAGRKAAAVENALPCSLEDLYKGVKKKMKISRNVYDAFGKCGDVEEILTIEIKPGWKKGTKITFPEKGNREPGVIPADLIFVIDEKPHALYRRDGNDLVINQEITLLEALTGKTLDLTTLDGRSLMIPLTDIVKPGAEVVVPNEGMPISKEPGMKGNLRVKLDVKYPSRLTPEQKSDLRRVLGGIS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1595 351 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 350 - -
Gso6g1595 351 SUPERFAMILY HSP40/DnaJ peptide-binding domain 177 253 IPR008971 GO:0006457|GO:0051082
Gso6g1595 351 PANTHER BNAA06G20720D PROTEIN 2 350 - -
Gso6g1595 351 CDD DnaJ 4 59 IPR001623 -
Gso6g1595 351 Gene3D - 172 251 - -
Gso6g1595 351 Gene3D DnaJ domain 2 142 IPR036869 -
Gso6g1595 351 Gene3D - 253 333 - -
Gso6g1595 351 SUPERFAMILY HSP40/DnaJ peptide-binding domain 256 341 IPR008971 GO:0006457|GO:0051082
Gso6g1595 351 CDD DnaJ_C 178 335 - -
Gso6g1595 351 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gso6g1595 351 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gso6g1595 351 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gso6g1595 351 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gso6g1595 351 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gso6g1595 351 MobiDBLite consensus disorder prediction 74 117 - -
Gso6g1595 351 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gso6g1595 351 SUPERFAMILY Chaperone J-domain 3 88 IPR036869 -
Gso6g1595 351 SMART dnaj_3 3 62 IPR001623 -
Gso6g1595 351 Pfam DnaJ C terminal domain 175 332 IPR002939 -
Gso6g1595 351 Pfam DnaJ domain 4 67 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1595 Gso-Chr6 16669560 16674950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1595 5 74 C2H2 Transcription Factor Family AT1G74250 36.486 1.25e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1595 K09510 - gmx:100781572 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1595 6 16669560 16674950 Gso6g1595 6 16669560 16674950 ECH