Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1584 ATGGCGAGGTCTCCTTCTTGTGAAAAAATCAATGTCAAAAGGGGTTTGTGGACTACAGAAGAAGATACAAAGAAGCTTGCATTTGGCTCCAAGCATGGATCTGGTAACTGGACTTCTGTCCCCAAAAAATCAGGGCTCAAGAGGTGTGGAAGGAGTTGTAGGATTAGGTGGACTAACTATCCCAGGCCTGATCTTAAAGACGACAACTTCACAACCCAAGAAGAAGATCTAATCATTAAGCTTCATGCAGCCATAGGTAGCAGGTGGTCTATAATAGCCCAACAACTTCCTGGGAGAACAGACACGGATGTAAAGAACTATTGGAACTCAAAGCTGAAAAAGAAGCTCTCTCAATTGGGGATTGACCCTGTCACCCACAAGCCCTTCTCTAAACTCATTGCTGACTATGGAAACATTGGGGGTTGCCAGAAACCAAGTACTCGAATTGCTTCAATCAATAAGGACTTCAAGAATGCAATGATGCTAAAATCAGAATCCCATCAAACCCTGCCAGAGGGATTTATTACAAACATCAATGACCAACCAAAGCCACCACCCAAAATGGAAACCACTGGAAACAACTTTTTGTTCAATAGAACTCATGGTGATGACCTCTCAATGAATCTTGACCAGTTCCAAGCCATATCAATGAAGTCGGGTGCCTCGAATTGCATAGACTTCGAGAATGAGATCATGTCAGTGTCTATGTTCGGGGAAGATTGCTTTTCAAAAACTTCATCACCATCTACTCCTTCTACTTGTTCCACTACAGCTTTTAGTTGGAACGACTTCCTTTTGGAAGATGCCTTTACACCACTTGCTAACCAAGAACAAGACTTGGTGAGTCAAATAGAGGATCTGACTTGGAATAAGATAGAGGTCAAGTCACTGCAAGCCTCAGGTAGTGACTTACAATTTTCTTCAGCATCTGACATTTCATTCATGGAAGCCATGCTTGATCAAGAAAATGAGATGTTCCTAAGTTTTCCTCACCTTATGGAGGAACCATCCAAATTGAATTAA 1023 0.4203 MARSPSCEKINVKRGLWTTEEDTKKLAFGSKHGSGNWTSVPKKSGLKRCGRSCRIRWTNYPRPDLKDDNFTTQEEDLIIKLHAAIGSRWSIIAQQLPGRTDTDVKNYWNSKLKKKLSQLGIDPVTHKPFSKLIADYGNIGGCQKPSTRIASINKDFKNAMMLKSESHQTLPEGFITNINDQPKPPPKMETTGNNFLFNRTHGDDLSMNLDQFQAISMKSGASNCIDFENEIMSVSMFGEDCFSKTSSPSTPSTCSTTAFSWNDFLLEDAFTPLANQEQDLVSQIEDLTWNKIEVKSLQASGSDLQFSSASDISFMEAMLDQENEMFLSFPHLMEEPSKLN* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1584 340 PANTHER F14D16.11-RELATED 1 337 - -
Gso6g1584 340 Gene3D - 7 67 - -
Gso6g1584 340 CDD SANT 69 112 IPR001005 -
Gso6g1584 340 CDD SANT 17 60 IPR001005 -
Gso6g1584 340 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso6g1584 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 60 IPR017930 -
Gso6g1584 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso6g1584 340 SMART sant 66 114 IPR001005 -
Gso6g1584 340 SMART sant 13 63 IPR001005 -
Gso6g1584 340 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Gso6g1584 340 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Gso6g1584 340 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso6g1584 340 Gene3D - 69 128 - -
Gso6g1584 340 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1584 Gso-Chr6 16458712 16460579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1584 1 335 MYB Transcription Factor Family AT3G28470 40.643 5.62e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso6g1584 Myb_DNA-binding 4.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1584 K09422 - gmx:100795381 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1584 6 16458712 16460579 Gso6g1584 6 16458712 16460579 ECH
Gso4g1477 4 43448168 43449541 Gso6g1584 6 16458712 16460579 GST