Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1582 ATGGATCCTCCTCTCATCACTGACTCCACATTCTCCCCCGCTTACTCTCTCGCCGAGATTTGGCCCGGAATGCCCCATTTCCCCCCTCCCTTCCCCCACCCCTCCTCCGCCGATCACTCCACCCTCACCGACCTCACCGCCACCCCCCGCAAGAGAAAGGACTGCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCGACGAGGACGACTGCTCCAAGGTCCTCTCCTCCACCACCACCGCCACTGCCAACCTCTCCAATAATGATTCTGGTAGCAATAAACAGATGAAGTTAGGAGGGTCCAGTGTTGAAAACGATGGTTTCAAAGCTGAGGCAGAAGCGAGTTCTGCGGGTGGTAACAAGTCAAGTGAGCAAAGCAATAAACCTTGTGAGGCACCTAAGCAAGACTATATTCATGTGAGAGCAAGAAGGGGCCAAGCAACCGATAGCCACAGTCTGGCAGAGAGAGCAAGAAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATTTGGTGCCAGGGTGTAACAAGGTAATTGGTAAAGCACTTGTTCTAGATGAGATAATCAATTACATCCAGTCACTGCAGCGTCAGGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGAATGAACATGAACCCTACTATTGATGGGTTTCCTTCAAAAGATGTTGGTACTCAGCCATTTGACATTGCTGGAATGGTATTTGGATCACAAGCAGCAAGGGGGTATGCTCAGGGATCATCACCTCCTGGATGGCTGCATATGCAGATAGGAGGTGGTTTCGAGAGAACAACATAA 819 0.5092 MDPPLITDSTFSPAYSLAEIWPGMPHFPPPFPHPSSADHSTLTDLTATPRKRKDCSSSSSSSAAAAAADEDDCSKVLSSTTTATANLSNNDSGSNKQMKLGGSSVENDGFKAEAEASSAGGNKSSEQSNKPCEAPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMNPTIDGFPSKDVGTQPFDIAGMVFGSQAARGYAQGSSPPGWLHMQIGGGFERTT* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1582 272 Gene3D - 145 222 IPR036638 GO:0046983
Gso6g1582 272 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 272 IPR024097 GO:0006355
Gso6g1582 272 SMART finulus 154 204 IPR011598 GO:0046983
Gso6g1582 272 Pfam Helix-loop-helix DNA-binding domain 152 199 IPR011598 GO:0046983
Gso6g1582 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 218 IPR036638 GO:0046983
Gso6g1582 272 MobiDBLite consensus disorder prediction 74 102 - -
Gso6g1582 272 CDD bHLH_AtBPE_like 138 223 - -
Gso6g1582 272 PANTHER BNAC05G07950D PROTEIN 1 272 - -
Gso6g1582 272 MobiDBLite consensus disorder prediction 118 132 - -
Gso6g1582 272 Coils Coil 195 215 - -
Gso6g1582 272 MobiDBLite consensus disorder prediction 26 135 - -
Gso6g1582 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 198 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1582 Gso-Chr6 16433077 16437278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1582 1 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 50.000 1.46e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso6g1582 HLH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1582 - - gmx:100777819 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1582 6 16433077 16437278 Gso6g1582 6 16433077 16437278 ECH
Gso4g1479 4 43473901 43478056 Gso6g1582 6 16433077 16437278 GST