Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1579 ATGCCTCTATCCTCCTCTTCCTCCTCCGCCGTAGACTCCGCCGTCTCCGGCGAGATCATGCTCTTTGGCGTTAGAGTCGTGGTTGACTCCATGCGGAAGAGTGTGAGTATGAACAACCTCTCGCAGTACGAGCTTCCTCGCGACGCTGCCAACGCCAAAGACGACGCCGCAGGATACGCCTCCGCCGATGATGCAGCTCCGATCAACTCCGACAAGAACCGCGACCGCAAGCGAGGGATTCCATGGACTGAGGAAGAGCACAAGCTATTCTTGGTGGGGTTGCAGAAAGTGGGGAAAGGTGATTGGAGAGGGATCTCAAGGAACTATGTCAAAACGAGGACGCCAACACAGGTTGCTAGCCATGCTCAGAAGTACTTTCTCCGCCGCACCAACCTCAATCGCCGTCGCCGGAGATCCAGCCTCTTTGACATCACCACCGACTCGGTCTCTACAACCCCTATGGAGGAAGGAGTACAGATCCAGCATCAAGATAATGTGTCTCTCTTTCATCCAGTGTACCCTGTAACCCCTGAAGGAAGCAACATGAATGGATTTCCAAAGATGTCCATGTATCCAAAGGATGTTGGTTCTGGAGTCATGTCAGTTCAAGCTGGGAATCCAATGGAAACACTCACTTTGGGACAAGGAAATGTGGAACAGAATGGGCCAAGTACTAAGCTAGTTTGTACAACCCCTATTGTTCCAGATCATAGAGGCTCCACAGTGTCTGATATCACTGCAAGTTTGAGTTCCATTGATCCACCAACACTGTCTCTGGGGTTATCTTTGTCATCCAGTCCAAGACAAACATCATCATCAATACATGCAGCTTTACATGCACTGCCATACTTCAACAATCAAGATAGCATCATAAGTGCTGCTTGA 885 0.5017 MPLSSSSSSAVDSAVSGEIMLFGVRVVVDSMRKSVSMNNLSQYELPRDAANAKDDAAGYASADDAAPINSDKNRDRKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDSVSTTPMEEGVQIQHQDNVSLFHPVYPVTPEGSNMNGFPKMSMYPKDVGSGVMSVQAGNPMETLTLGQGNVEQNGPSTKLVCTTPIVPDHRGSTVSDITASLSSIDPPTLSLGLSLSSSPRQTSSSIHAALHALPYFNNQDSIISAA* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1579 294 Gene3D - 80 132 - -
Gso6g1579 294 ProSiteProfiles Myb-like domain profile. 74 126 IPR001005 -
Gso6g1579 294 SUPERFAMILY Homeodomain-like 76 130 IPR009057 -
Gso6g1579 294 Pfam Myb-like DNA-binding domain 81 126 IPR001005 -
Gso6g1579 294 CDD SANT 81 126 IPR001005 -
Gso6g1579 294 MobiDBLite consensus disorder prediction 54 79 - -
Gso6g1579 294 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 15 294 - -
Gso6g1579 294 PANTHER KIN2 15 294 - -
Gso6g1579 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 130 IPR017930 -
Gso6g1579 294 SMART sant 78 128 IPR001005 -
Gso6g1579 294 ProSiteProfiles SANT domain profile. 82 130 IPR017884 -
Gso6g1579 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 77 128 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1579 Gso-Chr6 16399217 16402066 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso6g1579 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1579 - - gmx:778056 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1484 4 43525816 43528615 Gso6g1579 6 16399217 16402066 GST
Gso5g0269 5 2799613 2801614 Gso6g1579 6 16399217 16402066 PCT
Gso17g0795 17 7412053 7414112 Gso6g1579 6 16399217 16402066 PCT
Gso6g1579 6 16399217 16402066 Gso5g0269 5 2799613 2801614 PCT
Gso6g1579 6 16399217 16402066 Gso17g0795 17 7412053 7414112 PCT