Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1571 ATGACTTCTTTGTCTACCCATCACACCTATAGCCGAAAGCAAAAATCTCTCGGCCTCCTCTGCACCAATTTTCTGAGTTTGTACAACAAAGAAGGTGTGCGCCTGGTCGGTCTCGATGACGCAGCTTCGCGGTTAGGTGTAGAAAGACGTCGGATCTACGACATCGTTAATGTTTTAGAGAGTGTCGGTGTGCTAACCAGAAAAGCTAAGAATCAGTATACTTGGAAAGGATTTTGTGCAATTCCTGCTGCCTTACAAGAACTTAAGGATGAAGGTTTGAAGGAGAATCCTGGATCATTTGATGACTCCAATGACAATGCAAAAGTGTCTGATGATGAGGAGGAGGAAGAAGAAACATTTCCTAATATTAACATTGGGAGTCAGAGTGAGAAGGAAAATCCTGATTACACTGCTACTGTCAAATCCTCCAAGAATGAAAACAGAAGGGAAAAATCTCTGGCATTGCTTACTCAGAATTTTGTCAAGCTTTTTGTCTGCTCTAATTTTGAAATGATCTCCCTTGACGAAGCTGCAAAGTTGTTGCTTGGAAATGCCAACAATAGAACAAAAGTCAGACGTCTATATGATATTGCGAATGTGTTATCCTCCATGAACCTAATCGAGAAGACCCATACAACAAACACAAGAAAACCAGCATTCAGGTGGTTGGGTGTGAGGGGAAAAACATGGGGTGGATCAGTTGACTTGGCTCAAAATTCAAATGTCAAAGAGTCACGGAAAAGGATGTTTGGAACTGACATTGGAAACATAAGTTTTAAAAGGAACAAAGTTGATTTGTCCATGGATGGCCAGAATTCTAAAATGCAAAATCAACACGAAAATATTAGTCCACGAGCTCAGTTAGAGAAAATCATCATAAAAAAAGATGCTAAGCAGACTTCAGAGAGCTATCAGTTTGGCCCTTTTGCTCCAGCTTATGTGCCCAAAGTTGGAACCTCTGAAAATAATAGTGTGAAAAAGGTGCATGACTGGGACAGCCTCGCACAGGAGCATCGTCCTCAATATCAAAACCAAGGAGTCTTAACAAAGCAACTTCAGTTCATCTAA 1068 0.4092 MTSLSTHHTYSRKQKSLGLLCTNFLSLYNKEGVRLVGLDDAASRLGVERRRIYDIVNVLESVGVLTRKAKNQYTWKGFCAIPAALQELKDEGLKENPGSFDDSNDNAKVSDDEEEEEETFPNINIGSQSEKENPDYTATVKSSKNENRREKSLALLTQNFVKLFVCSNFEMISLDEAAKLLLGNANNRTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGVRGKTWGGSVDLAQNSNVKESRKRMFGTDIGNISFKRNKVDLSMDGQNSKMQNQHENISPRAQLEKIIIKKDAKQTSESYQFGPFAPAYVPKVGTSENNSVKKVHDWDSLAQEHRPQYQNQGVLTKQLQFI* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1571 355 MobiDBLite consensus disorder prediction 121 141 - -
Gso6g1571 355 MobiDBLite consensus disorder prediction 93 148 - -
Gso6g1571 355 SUPERFAMILY "Winged helix" DNA-binding domain 150 225 IPR036390 -
Gso6g1571 355 SUPERFAMILY "Winged helix" DNA-binding domain 11 75 IPR036390 -
Gso6g1571 355 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 6 346 - -
Gso6g1571 355 SMART E2F_TDP_2 12 77 IPR003316 GO:0005667|GO:0006355
Gso6g1571 355 SMART E2F_TDP_2 148 224 IPR003316 GO:0005667|GO:0006355
Gso6g1571 355 Pfam E2F/DP family winged-helix DNA-binding domain 150 224 IPR003316 GO:0005667|GO:0006355
Gso6g1571 355 Pfam E2F/DP family winged-helix DNA-binding domain 13 77 IPR003316 GO:0005667|GO:0006355
Gso6g1571 355 Gene3D - 7 79 IPR036388 -
Gso6g1571 355 Gene3D - 142 226 IPR036388 -
Gso6g1571 355 PANTHER TRANSCRIPTION FACTOR E2F 6 346 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1571 Gso-Chr6 16271180 16292946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1571 3 345 E2F-DP Transcription Factor Family AT3G48160 54.237 1.50e-112 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gso6g1571 E2F_TDP 5.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1571 K09391 - gmx:100818090 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1571 6 16271180 16292946 Gso6g1571 6 16271180 16292946 ECH
Gso4g1496 4 43726335 43732268 Gso6g1571 6 16271180 16292946 GST
Gso5g0277 5 2900602 2904132 Gso6g1571 6 16271180 16292946 PCT
Gso17g0787 17 7324092 7328411 Gso6g1571 6 16271180 16292946 PCT
Gso6g1571 6 16271180 16292946 Gso5g0277 5 2900602 2904132 PCT
Gso6g1571 6 16271180 16292946 Gso17g0787 17 7324092 7328411 PCT