Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1564 ATGGGTGGCAACGGCAAACACAGGTGGAAATTCAGCTTCCACCGTTCCTCCAACCATCCTCCCAAGGAATTCACCTGCCCCATCTCCGGCTCACTAATGTCCGACCCTGTCGTCGTAGCTTCGGGCCAAACCTTCGAACGACTCGCCGTTCAACTCTGCAAAGACCTCAATTTCTCCCCCAAGCTAGACGACGGCACCCGACCCGACTTCTCAACCCTAATCCCCAACCTCGCCATCAAAACGACAATCCTCCACTGGTGCGACAACGCCCGCACCCAACACCCGCGCCCTCCCGATTACGCCTCCCTCCAGCGCCTCGTCTTAGAACAAAAAGAAAATGACCGCGTTAGGGTTTCCGAAATGGAGCTTCTCAACGCCGTCGCCGACCTCCCTCCCGTCATCTTCTCCCACGCCGCCACCGAGTTAGGCCCCCGAGTCAACCACTTCAACTCGGGATCCTCCTCCGAGCAGGAATCCGTCATCATCCCCTCGAGTCCGGGAACTCCGTTACCGTTAACTATTCGCCCGACGTGCTTCTCCTCTTCCTCCTCCTCCTCCTGCGAGATCGAAATCGAAAACCCTAACACCCCGGCGTCGGAGGAAGAAGAAGGACTATTAAAGAAATTGAAGAGTAACGAGGTGTTTGAGCAAGAAGAAGGCGTAATCGCGCTGAGAAAGATCACGAGGAACAAAGAGGATGCTAGGGTTTCGCTCTGCACGCCGCGGGTGTTACTAGCGCTGCGTGGTTTGATCGCCTCGCGATACGGCGTTGTCCAGGTCAACGCGGTGGCGTCTCTGGTCAACCTTTCGCTAGAGAAGCAGAACAAGGTGAAGATTGTTAGGTCAGGGTTTGTTCCGTTCTTGATTGATGTTTTGAAGGGGGGACTGGGTGAGTCGCAGGAGCACGCTGCGGGCGCGCTTTTTAGCTTGGCTTTGGACGATGACAACAAAATGGCGATCGGCGTTCTCGGCGCGTTGCATCCGTTGATGCACGCGCTTCGTGCCGAGTCCGAGCGGACCCGGCACGACTCGGCGCTCGCACTGTATCATTTGTCACTTGTACAGAGCAATAGAATGAAACTGGTGAAGCTCGGCGTGGTCCCCACACTTCTCTCGATGGTGGTGGCTGGGAATCTGGCGAGCCGGGTGCTGCTGATTCTCTGCAACCTCGCCGTGTGCACGGAGGGGCGCACGGCGATGCTGGACGCCAACGCGGTGGAGATTTTAGTATCACTGTTGAGAGGGAACGAGTTGGACTCGGAGGCGACTCGGGAGAATTGCGTGGCGGCGCTTTACGCGCTGAGTCATAGAAGCTTGAGGTTCAAGGGTTTGGCTAAGGAAGCGAGAGTGGCGGAGGTTTTGAAGGAGATTGAGGAAACGGGTACGGAGAGGGCGAGGGAGAAGGCGAGAAAGGTGTTGCACATGTTGAGAACTGTGGGAGATGGAGATGGTGATGAGATTGACGAGTTTTACGACTCGGCCGGGTTGACTCGGAATCGGTACCGAGCTGGTGCTGCCAGGAATAGCGACAACCTCGTCAACACGACCACGTTTTAG 1557 0.5645 MGGNGKHRWKFSFHRSSNHPPKEFTCPISGSLMSDPVVVASGQTFERLAVQLCKDLNFSPKLDDGTRPDFSTLIPNLAIKTTILHWCDNARTQHPRPPDYASLQRLVLEQKENDRVRVSEMELLNAVADLPPVIFSHAATELGPRVNHFNSGSSSEQESVIIPSSPGTPLPLTIRPTCFSSSSSSSCEIEIENPNTPASEEEEGLLKKLKSNEVFEQEEGVIALRKITRNKEDARVSLCTPRVLLALRGLIASRYGVVQVNAVASLVNLSLEKQNKVKIVRSGFVPFLIDVLKGGLGESQEHAAGALFSLALDDDNKMAIGVLGALHPLMHALRAESERTRHDSALALYHLSLVQSNRMKLVKLGVVPTLLSMVVAGNLASRVLLILCNLAVCTEGRTAMLDANAVEILVSLLRGNELDSEATRENCVAALYALSHRSLRFKGLAKEARVAEVLKEIEETGTERAREKARKVLHMLRTVGDGDGDEIDEFYDSAGLTRNRYRAGAARNSDNLVNTTTF* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1564 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 93 IPR013083 -
Gso6g1564 518 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 508 - -
Gso6g1564 518 Gene3D - 189 491 IPR011989 -
Gso6g1564 518 SUPERFAMILY ARM repeat 205 476 IPR016024 -
Gso6g1564 518 SMART Ubox_2 23 86 IPR003613 GO:0004842|GO:0016567
Gso6g1564 518 PANTHER U BOX DOMAIN-CONTAINING 1 508 - -
Gso6g1564 518 Pfam U-box domain 21 89 IPR003613 GO:0004842|GO:0016567
Gso6g1564 518 CDD RING-Ubox 26 72 - -
Gso6g1564 518 ProSiteProfiles U-box domain profile. 19 93 IPR003613 GO:0004842|GO:0016567
Gso6g1564 518 SMART arm_5 354 392 IPR000225 GO:0005515
Gso6g1564 518 SMART arm_5 272 312 IPR000225 GO:0005515
Gso6g1564 518 SMART arm_5 313 353 IPR000225 GO:0005515
Gso6g1564 518 SMART arm_5 393 436 IPR000225 GO:0005515
Gso6g1564 518 SUPERFAMILY RING/U-box 16 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1564 Gso-Chr6 16148280 16150443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1564 1 518 U-box Gene Family AT5G65200 56.093 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1564 - - gmx:100815075 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1564 6 16148280 16150443 Gso6g1564 6 16148280 16150443 ECH
Gso4g1503 4 43876659 43878799 Gso6g1564 6 16148280 16150443 GST