Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1560 ATGATGGCATCATTTGCAGGGACTACTCAGAAGTGCAAAGCATGTGAGAAGACTGTGTATTTGGTGGATCAGCTCACTGCTGACAACAAGATCTATCACAAATCATGTTTCAGATGCTACCACTGCAAGGGTACCCTTAAGTTGAGTAACTATTGTTCCTTTGAGGGTGTGTTATACTGTAAGCCTCATTTTGATCAACTCTTTAAGAAGACTGGCAGCTTAGACAAAAGTTTTGAAGGTATTCCAAGAACTGCTAGACTTGAAAGATCTACTGATCAGGTCCAAACCAATAGCAAGGTTTCAAATTTGTTTGCTGGAACTCAGGAAAAATGTGTTGCTTGCAAGAAAACAGTTTACCCAATTGAAAAGGTAGCTGTTGATGGAACATCTTACCATAAGGCTTGTTTCAGGTGCACTCATGGGGGGTGTGTAATTAGCCCCTCAAATTACGTTGCCCATGAACATCGTCTTTATTGTAGGCACCATCACACTCAGTTGTTCAAGCAGAAAGGTAACTTCAGCCAACTTGACAAGCAAGAAAATGATGAAGGGGTGACTGAGAACACAATAACTGAGTAA 579 0.4093 MMASFAGTTQKCKACEKTVYLVDQLTADNKIYHKSCFRCYHCKGTLKLSNYCSFEGVLYCKPHFDQLFKKTGSLDKSFEGIPRTARLERSTDQVQTNSKVSNLFAGTQEKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKQENDEGVTENTITE* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1560 192 CDD LIM2_SF3 111 171 - -
Gso6g1560 192 ProSitePatterns LIM zinc-binding domain signature. 12 46 IPR001781 -
Gso6g1560 192 ProSiteProfiles LIM domain profile. 109 169 IPR001781 -
Gso6g1560 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 38 78 - -
Gso6g1560 192 Gene3D Cysteine Rich Protein 6 76 - -
Gso6g1560 192 Gene3D Cysteine Rich Protein 105 175 - -
Gso6g1560 192 PANTHER OS06G0237300 PROTEIN 2 186 IPR045268 GO:0051015
Gso6g1560 192 Pfam LIM domain 111 166 IPR001781 -
Gso6g1560 192 Pfam LIM domain 12 66 IPR001781 -
Gso6g1560 192 CDD LIM1_SF3 8 70 - -
Gso6g1560 192 ProSiteProfiles LIM domain profile. 10 70 IPR001781 -
Gso6g1560 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 103 136 - -
Gso6g1560 192 SMART lim_4 110 162 IPR001781 -
Gso6g1560 192 SMART lim_4 11 63 IPR001781 -
Gso6g1560 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 175 - -
Gso6g1560 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 37 - -
Gso6g1560 192 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1560 Gso-Chr6 16111048 16114611 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gso6g1560 LIM 2.5e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1560 K09377 - gmx:100500501 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1560 6 16111048 16114611 Gso6g1560 6 16111048 16114611 ECH
Gso4g1507 4 43915345 43919003 Gso6g1560 6 16111048 16114611 GST
Gso5g0287 5 3000763 3004638 Gso6g1560 6 16111048 16114611 PCT
Gso17g0780 17 7238077 7242394 Gso6g1560 6 16111048 16114611 PCT
Gso6g1560 6 16111048 16114611 Gso5g0287 5 3000763 3004638 PCT
Gso6g1560 6 16111048 16114611 Gso17g0780 17 7238077 7242394 PCT