Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1556 ATGCATGGGTGTGGAGGTGAGAAGGGTAAGGGGACTCGGCACATGTGGAAAGCCCCCGTTCGTGGCGACTCGTCTCTGAACGCCGATGTTTCTTCGTCTTCTTCGTCGTCATCTTCGACAGTGAAGTCGTTCTGCAAGGACGGTCGCAAAATTAGCGTTGGTGAATGTGCTCTCTTCAAACCATCTGAAGATCGCCCACCATTTATTGGTATAATTCATTGTCTGACATTTGGCAAAGAGAAAAAATTGAAGTTAGGTGTTAGTTGGCTTTATCGATCCATTGAAGTAAAACTCAACAAGGGCGTGCCATTGGAGGCTGCTCCAAATGAAATCTTCTACACCTTCCATAAGGATGAGACTGATGCTGAATCGCTGCTCCATCCATGTAAAGTTGCATTTCTTCGTAAGGGTGCTGAACTTCCATCAGGGTTTTCTTCATTTGTGTGCAGGAGGGTTTATGACATTGCAAACAAGTGTTTATGGTGGTTAAATGATCAAGATTATATTAATGATTGTCAAGAAGAAGTAGATCAACTATTATACAGGACTTGTGTACGAATGCATGCAACAGTGCAGCCAGGTGGTCGATCTCCTAAGCCAATGAGTAGTCCAACATCAACATCACAGTTAAAATCTGTTTCAGATAGTGTCCAGAACAATACTTCTTCCTTTCCATCTCACATTAAGGGGAGGAAAAGGGAAAGGGCAGATCAAGGCTCTGAGCCTGTCAAGCGAGAACGATCAATTAAAACTGAGGATGGAGATTCTGGTCATTTCAGGCATGATAACATTTTGAAGACAGAGATTGCTAAAATTACAGAAAAGGGACGGCTTGTTGACAATGAAGGAGTGGAAAAATTAGTGCAGCTGATGGTTCCTGATAGAAATGAGAAAAAGATAGATTTAGCTAGCCGGTCATTGCTTGCAGCTGTCATTGCAGCAACAGAAAAATTAGATTGTCTTAGTCAGTTTGTGCAGCTGAGGGGTTTGCCTGTATTTGATGAATGGCTCCAAGAGGTCCATAAAGGGAAGATTGGTGATGGTGTTGGGTCTAGGGATGGTGATAAATCTGTCGAGGAATTTCTCTTGGTATTGCTTCGGGCACTTGATAAGCTTCCAGTAAATCTTCAGGCTTTACAAACATGCAACATTGGAAAATCTGTGAATCATTTGCGAACGCATAAAAACACTGAAATTCAGAGGAAAGCAAGAGGTTTAGTGGACACATGGAAGAAACGTGTTGAAGCTGAAATGAATATAAAAGATGCAAAGTCTGGTTCAGGTCCCACTGTTCACTGGCCTGCCAAATCACGTTCTTCTGATGTTGGTCATGGCGGGAATAGACATTCAGGTGCATCATCTGATATTGCCATGAAGAGTTCTGTTACACAGCTTTCTGCATCCAAAACAGCCTCTGTGAAGATTGTCCAGGGAGAGAATACTATTAGATCTGCATCGACATCTACATTTCCAGGGCCTGCTAAATCAGTGCTGTCACCTGCATCTGTGACTGCAAACCTAAAAGATGGACAGCCCTGTATTGCCGCTGTCAGTGGAGGTTCTGATCTTCCCATGGTGAATGCAAGGGATGAGAAAAGTAGTAGTTCTAGTCAATCTCACAACAACAGTCAATCTTGTTCTAGTGACCATGCTAAAACTGGAGGTCATTCAGGAAAGGAGGATGCCAGAAGCTCTACTGCAATGAGCGTGAATAAGATATCTGGAGGCTCTTCACGGCACCGAAAATCTATTAATGGATTTTCAGGTTCAACTCCATCCGGAGGGCAAAGGGAAACTGGATCAAGTAGGAATTCCTCCTTGCACAAAAATTTAACTTCAGAGAAAATATCTCAACCTGGATTAATGGATAAGGCACTTGATGGAACTTCTCTTGAAGGAGTTACTTGCAAGTTGATTGTTAAAATTCCAAGCCAAGGTAGAAGCCCTGCTCAAAGTGCTAGTGCAGGTTCTTTTGATGATCCTACAATCATGAATAGTCGAGCCTCATCTCCTGTTCTTCCAGAGAAGCACGATCAGTTTGATCACTGCTCAAAGGAAAAGAGTGACCTTTATCGAGCCAATATTGGCTCAGATATTAATACTGAATCTTGGCAGAGTAATGATTTTAAAGATGTATTGACTGGCTCTGATGAGGCTGATGGATCACCTGCTGCAGTTACTGATGAAGAGCGCTGTCGGATTGTCAATGATTGTAAGAAAACATTTGAGGTACCAAAAGCCGCTTCCTCATCATCTGGAAATGAAAATAAAGCTGGAAATTTGCAGGATGCTTCTTACAGCTCAATAAATGCTTTAATTGAAGGTGTTAAGTACTCTGAGGCTGATGATGTTGGAATGAATCTTCTTGCGAGTGTGGCTGCTGGAGAGATTTTGAAATCCGAATTGTTAACTCCGACTGGATCTCCAGAAAGAAACACTGCTGCTGTTGAACAGTCATGCACAGGCAATGGTATGGTTAAGTCATCTGAAGAAAATCTTGTCCGGGATGAATGCCACTCAAATAATGGTCTTGATGGTGAACATAAGAATCAGGGTTCTGTAACAGATGATTTAGGGGCAAATGATGAAAGTGATTCTGATTTTCGAGCTTCTGGTGAGAAAGCTGCAAGAGAGCTAAATAAGAGTGTTAATGCATGTAGTATGGATTTGCAACAGGTTTCTGAAATTATTTTAGAAAGCAAAGGAAAATTAAACGAAAAATCTGTATCTACTGCATTGCGTGGCCTTTCTGAAAGTTCTGTACAAGAAGCTAGAGATGGTGACAGAAGCAAGCAGCTCCAGGAGGTTGGTCGGGGAGTGAATGGTGGTGAAATTGTTGATGTTAAGGTCAGTTCTGTTGCAGAAGTTGAGGCAGAAGCAACTGAAAAATTGTCACATATAGCTGTGGAAGTGGATGTACAGAGTGATAATTGTACTGCTGAAGGATCGAGTGGTGGTGGACGGACAGCTGCTGTTCTTGTTCCGTCTGATTTGGCAAGAGGAAAAGATGAGAATGTACTCCATTCTTCTGCTTATAGTGTTGATAAGGTTCCTGAAGACTTGACTGAACGGGAGTCTGAAAAAGCTGATGATGTTGATGCTGAGAATCTTCCTAGTCAGTCTAAAAAGGAAAGAAATGAGTGTGAAAGTGATACCTTGACAATGCCTGAGAATAGAGGTTTATGCTCTATCGTGACTGGTATTGCTGCTGAACATGTGGAGGAAAATTTAGAAACTAAAGAGGTTCATGACCAACCTGCCAGAGAGGAACTTCCCAAAGATTCACCTAGTGTCCGTTCACAAGAAATGGATAAGCATCTTGATTCTAAAGGATCAAAATTGACTGCCATGGAAGCGGAGGAGGCTGAGGAGTGTACCTCTACCACTGCAGATGCTTCTTCCGTGTCTGCTGCAGCTGTGTCAGATGCAGATGCAAAGGTTGAATTTGATTTAAATGAAGGGCTCAATGCAGATGATGAGAAATGCGGTGAGTTCAACAGCAGTGCACCTGCTGGTCGTTTGGTCAGTCCTGTGCCATTTCCTGCTTCATCTATGTCTTGTGGTATTCCTGCTCCTGTCACTGTGGCTGCTGCTGCAAAGGGGCACTTTGTGCCTCCTGAAGATTTATTGAGAAGTAAAGGGGAAATTGGTTGGAAGGGATCCGCTGCCACTAGTGCATTTAGGCCAGCCGAGCTCAGGAAAGTTATGGAAATGCCTTTTGGGGCGCTAACTTCCTCTATACCTGATGCTCCAGCTGGAAAGCAGAGTCGAGCACCATTGGATATTGACTTGAATGTGGCTGATGAAAGAATACTTGATGATATTTCTTCTCAACCCTGTGCTCGTCACACGGATTCTGTATCTCTTACAACTGATGGTCATGATCCTGTAAGCAGTAAAATGGCTTCACCTGTTCGCTGCTATGGAGGGCTTGGTCTTGACTTGAACCAGGTGGATGAAGCTTCTGATGTGGGCAATTGCTTGAGCAGTAATCATAAAATTGATGTGCCAATTAAGCAGGTGAAGTCATCATTGGGTGGCCCACCAAATCGAGAAGTGAATGTCCACAGGGACTTTGATTTGAACAATGGACCTTCAGTTGATGAAGTCACCACTGAATCCTCATTGTTCTCTCAGCATGCCAGGAGCAGTGTGCCATCTCAACCACCTGTTTCTGGACTTAGGGTGAGTACTGCTGAGCCAGTCAACTTCTCTTGGCTTCCTTCCAGTGGCAACACCTATTCTGCTGTCACAATATCTTCAATTATGCCTGATAGAGGGGATCAGCCCTTTTCAATTGTTGCCCCAAATGGGCCACAAAGGTTGTTGACTCCTGCTGCTGGTGGCAACCCATTTGGACCTGATGTTTATAAGGGACCAGTATTGTCATCTCCATTTGAATATCCTGTCTTCCCTTTTAATTCCAGCTTTCCTCTTCCATCAGCTTCTTTTTCTGCCGGATCAACTACTTATGTATATCCAACATCAGGCAATCGGCTTTGCTTTCCTGTGGTAAATTCACAGTTAATGGGGCCTGCTGGTGCGGTTTCATCTCATTACCCCCGGCCTTATGTTGTTGGCCTTACAGAAGGTAGCAATAGTGGTAGTGCTGAGACCAGTAGAAAATGGGCAAGGCAGGGTTTAGATCTTAATGCGGGACCCGGAGGTTCAGACATGGAGGGGAGAGACGACAATTCTCCTCTTCCATCTAGGCAACTTTCTGTTGCTAGTTCACAGGCCCTAGCTGAGGAGCAAGCAAGGATCCAGTTGGCTGGTAGTGTTTGTAAGAGGAAGGAGCCTGATGGTGGGTGGGATGGCTACAACCAATCCTCATGGCAATAG 4842 0.4387 MHGCGGEKGKGTRHMWKAPVRGDSSLNADVSSSSSSSSSTVKSFCKDGRKISVGECALFKPSEDRPPFIGIIHCLTFGKEKKLKLGVSWLYRSIEVKLNKGVPLEAAPNEIFYTFHKDETDAESLLHPCKVAFLRKGAELPSGFSSFVCRRVYDIANKCLWWLNDQDYINDCQEEVDQLLYRTCVRMHATVQPGGRSPKPMSSPTSTSQLKSVSDSVQNNTSSFPSHIKGRKRERADQGSEPVKRERSIKTEDGDSGHFRHDNILKTEIAKITEKGRLVDNEGVEKLVQLMVPDRNEKKIDLASRSLLAAVIAATEKLDCLSQFVQLRGLPVFDEWLQEVHKGKIGDGVGSRDGDKSVEEFLLVLLRALDKLPVNLQALQTCNIGKSVNHLRTHKNTEIQRKARGLVDTWKKRVEAEMNIKDAKSGSGPTVHWPAKSRSSDVGHGGNRHSGASSDIAMKSSVTQLSASKTASVKIVQGENTIRSASTSTFPGPAKSVLSPASVTANLKDGQPCIAAVSGGSDLPMVNARDEKSSSSSQSHNNSQSCSSDHAKTGGHSGKEDARSSTAMSVNKISGGSSRHRKSINGFSGSTPSGGQRETGSSRNSSLHKNLTSEKISQPGLMDKALDGTSLEGVTCKLIVKIPSQGRSPAQSASAGSFDDPTIMNSRASSPVLPEKHDQFDHCSKEKSDLYRANIGSDINTESWQSNDFKDVLTGSDEADGSPAAVTDEERCRIVNDCKKTFEVPKAASSSSGNENKAGNLQDASYSSINALIEGVKYSEADDVGMNLLASVAAGEILKSELLTPTGSPERNTAAVEQSCTGNGMVKSSEENLVRDECHSNNGLDGEHKNQGSVTDDLGANDESDSDFRASGEKAARELNKSVNACSMDLQQVSEIILESKGKLNEKSVSTALRGLSESSVQEARDGDRSKQLQEVGRGVNGGEIVDVKVSSVAEVEAEATEKLSHIAVEVDVQSDNCTAEGSSGGGRTAAVLVPSDLARGKDENVLHSSAYSVDKVPEDLTERESEKADDVDAENLPSQSKKERNECESDTLTMPENRGLCSIVTGIAAEHVEENLETKEVHDQPAREELPKDSPSVRSQEMDKHLDSKGSKLTAMEAEEAEECTSTTADASSVSAAAVSDADAKVEFDLNEGLNADDEKCGEFNSSAPAGRLVSPVPFPASSMSCGIPAPVTVAAAAKGHFVPPEDLLRSKGEIGWKGSAATSAFRPAELRKVMEMPFGALTSSIPDAPAGKQSRAPLDIDLNVADERILDDISSQPCARHTDSVSLTTDGHDPVSSKMASPVRCYGGLGLDLNQVDEASDVGNCLSSNHKIDVPIKQVKSSLGGPPNREVNVHRDFDLNNGPSVDEVTTESSLFSQHARSSVPSQPPVSGLRVSTAEPVNFSWLPSSGNTYSAVTISSIMPDRGDQPFSIVAPNGPQRLLTPAAGGNPFGPDVYKGPVLSSPFEYPVFPFNSSFPLPSASFSAGSTTYVYPTSGNRLCFPVVNSQLMGPAGAVSSHYPRPYVVGLTEGSNSGSAETSRKWARQGLDLNAGPGGSDMEGRDDNSPLPSRQLSVASSQALAEEQARIQLAGSVCKRKEPDGGWDGYNQSSWQ* 1614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1556 1613 MobiDBLite consensus disorder prediction 516 624 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 191 260 - -
Gso6g1556 1613 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1613 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 196 226 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 1 42 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 1365 1394 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 803 873 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 25 42 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 422 454 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 227 260 - -
Gso6g1556 1613 SMART TFS2_5 337 416 IPR003617 GO:0005634
Gso6g1556 1613 MobiDBLite consensus disorder prediction 1364 1394 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 830 844 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 1 17 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 528 552 - -
Gso6g1556 1613 ProSiteProfiles TFIIS N-terminal domain profile. 340 417 IPR017923 -
Gso6g1556 1613 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1613 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 845 859 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 1077 1110 - -
Gso6g1556 1613 Gene3D - 32 274 IPR043151 -
Gso6g1556 1613 SMART BAH_4 49 164 IPR001025 GO:0003682
Gso6g1556 1613 MobiDBLite consensus disorder prediction 1592 1613 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 1017 1052 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 912 936 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 645 684 - -
Gso6g1556 1613 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 281 418 IPR035441 -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 1009 1054 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 645 669 - -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 805 828 - -
Gso6g1556 1613 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 319 428 IPR035441 -
Gso6g1556 1613 MobiDBLite consensus disorder prediction 560 617 - -
Gso6g1556 1613 ProSiteProfiles BAH domain profile. 49 164 IPR001025 GO:0003682
Gso6g1556 1613 MobiDBLite consensus disorder prediction 1531 1580 - -
Gso6g1556 1613 CDD TFIIS_I 339 415 - -
Gso6g1556 1613 Pfam TFIIS helical bundle-like domain 365 414 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1556 Gso-Chr6 16021010 16029985 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gso6g1556 BAH 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1556 - - gmx:100788512 3077.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1556 6 16021010 16029985 Gso6g1556 6 16021010 16029985 ECH
Gso4g1511 4 44014892 44023508 Gso6g1556 6 16021010 16029985 GST