Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1547 ATGAGCAGCGATTTGTACCGATTCGCAGTATCATCCCACTTCAGTAGTTTTCCAAAATCGTTCTCCCTCCGTAAGAAAGTTCCATGGTGGTACCAGATCCTGGACCCGCGGTCGAGGTTCGTGGCGCGATGGAACCGCACGTTCCTCTACGTGTGCATCGTGGCTCTCTTCCTGGACCCTCTCTACTTCTACTTCCCCATCACCGGGGACAAGGCCTGCATGCAGACCGACATTGTCCTCGGCGTCTTCGTCACGTTCTCCCGCACCATCGCTGACCTCTTCTTCCTCTTCCACATGGTCCTCAAGTTCCGGACAGCTTTTGTCTCTCCCCTCTCCAGCGTCTACGGCCGCAAGGACCTCGTCACCGATCCTCGCCAGATCGCTTCGCGCTACCTCCGCTCCGATTTCGCCATTGATCTCTTCGCCACCCTTCCTCTGCCTCAGATAGTGATCTGGTTCGTGATTCCGGCAGTGAAAGATTCAACGGCGGCTCATGTAAATCATACCCTGTCCTTGATTGTTCTCATTCAGTTTATTCCTCGGTTGTTCCAGATTTTTCCTCTGCAACGGAGAATCTTGAAGACTAGTGGGCTTATTGCCAAAACTGCCTTGGCAGGGGCCTTATACAATCTTGGATCCTACATGCTAGCCAGCCATGTTTTAGGAGCTTCGTGGTACGTGTCATCGATTCAGCGGCAGTACGAGTGTTGGATAATAACATGCAAGAAGGAGATGAACAGAACGCACTCTCCATCATGTAACCCTTCCTTTCTCGACTGTGGCACCCTCGCCGACCATGAAAGGCAAGCTTGGTTCAAACGCACCAGAGTTCTCACCGCATGCGATGCCCTCAATGATAAAAACGAGTTTCAGTTTGGAATGTTCGCTGATGCTTTCACTGATCACGTCTCCTCATCAAGATTCTTCCAGAAATACTTTTACTGCCTCTGGTGGGGTTTGAAGAATTTAAGTTCGTATGGACAAAATCTTCAGACAAGCACTTACAGTGGTGAAACATTGTTTTCAAGTTTCATATGCATCGCAGGTCTAATCCTGTTTGCGCATCTCATTGGTAACATGCAGAATTATCTGCAATCTTCAACTGCAAAAGTTGAAGAGTGGAGACTTAAACAGAAAGATACAGAAGAGTGGATGAATCACCGGCAACTTCCACCAGAACTGCAACAACGTGTTCGACGGTTCGTTCAATATAAATGGCTTGCCACCAGAGGAGTGGACGAAGAAGCCATTTTGCGCGCTTTGCCTTTGGACCTTCGCCGCCAGATTCAGAGGCATCTCTGTCTCGACATTGTTCGCCGAGTTCCATTTTTTGGCCAAATGGATGACCAGCTTCTAGATGCAATATGCGAACGTCTTGTGTCATCGTTAAACACAAAAGACACATACATCGTTCGCGAAGGCGATCCGGTGAGAGAAATGCTCTTCATCATCAGAGGGCAAGTAGAGAGTTCCACAACCGATGGTGGAAGAACAGGTTTCTTCAACTCCATCACCCTCAGGCCCGGCGACTTTTGCGGCGAAGAATTGCTAACATGGGCCTTGATGCCCTCTTCAACTCTCAATCTCCCATCTTCCACTCAGACAGTGAAGACCCTCACCGAAGTGGAAGCATTTGCCTTAAGAGCCGAAGACCTCAAATTCGTGGCGAGCCAGTTCAAGCGCCTACACAGCAAGAAATTGCAACACGCTTTTAGGTACTATTCGCATCAGTGGAGGGCTTGGGGGGCACATTTTATACAAGCTGCGTGGAGACGGCACCGCAAGAGGAAATTGGCGATGGAGTTGTTGAAGGAGAACTTGTACTACACGAATGTGGTGGAAGATGATGATGATGAAGAAGGTAGTGCAGGAGAGAGTTCAATGGCGGGGCATACTCAGAATTTTGGGGCCACATTTTTGGCTTCGAAATTTGCTGCAAACACTAAGAAAGGGGCAATTAAAAAGGTGGCTATTAAACTTCCTGATGCTGATAGTTTGAAGATGCCCAAGATGTTCAAACCCACGGAACCTGATTTCTCAACATTCCATGATTAG 2055 0.4861 MSSDLYRFAVSSHFSSFPKSFSLRKKVPWWYQILDPRSRFVARWNRTFLYVCIVALFLDPLYFYFPITGDKACMQTDIVLGVFVTFSRTIADLFFLFHMVLKFRTAFVSPLSSVYGRKDLVTDPRQIASRYLRSDFAIDLFATLPLPQIVIWFVIPAVKDSTAAHVNHTLSLIVLIQFIPRLFQIFPLQRRILKTSGLIAKTALAGALYNLGSYMLASHVLGASWYVSSIQRQYECWIITCKKEMNRTHSPSCNPSFLDCGTLADHERQAWFKRTRVLTACDALNDKNEFQFGMFADAFTDHVSSSRFFQKYFYCLWWGLKNLSSYGQNLQTSTYSGETLFSSFICIAGLILFAHLIGNMQNYLQSSTAKVEEWRLKQKDTEEWMNHRQLPPELQQRVRRFVQYKWLATRGVDEEAILRALPLDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDTYIVREGDPVREMLFIIRGQVESSTTDGGRTGFFNSITLRPGDFCGEELLTWALMPSSTLNLPSSTQTVKTLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRAWGAHFIQAAWRRHRKRKLAMELLKENLYYTNVVEDDDDEEGSAGESSMAGHTQNFGATFLASKFAANTKKGAIKKVAIKLPDADSLKMPKMFKPTEPDFSTFHD* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1547 684 Pfam Cyclic nucleotide-binding domain 466 554 IPR000595 -
Gso6g1547 684 SUPERFAMILY cAMP-binding domain-like 372 568 IPR018490 -
Gso6g1547 684 Gene3D - 47 367 - -
Gso6g1547 684 SUPERFAMILY Voltage-gated potassium channels 35 365 - -
Gso6g1547 684 SMART cnmp_10 443 574 IPR000595 -
Gso6g1547 684 Gene3D Helix hairpin bin 369 434 - -
Gso6g1547 684 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 9 682 - -
Gso6g1547 684 ProSiteProfiles cAMP/cGMP binding motif profile. 443 573 IPR000595 -
Gso6g1547 684 Pfam Ion transport protein 44 370 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso6g1547 684 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 9 682 - -
Gso6g1547 684 Gene3D Jelly Rolls 441 561 IPR014710 -
Gso6g1547 684 CDD CAP_ED 443 574 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1547 Gso-Chr6 15931980 15938151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1547 10 679 Ion Channels AT3G48010 65.136 0.0 923
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1547 K05391 - gmx:100783672 1323.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1547 6 15931980 15938151 Gso6g1547 6 15931980 15938151 ECH
Gso4g1526 4 44219115 44226068 Gso6g1547 6 15931980 15938151 GST