Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1545 ATGGCCGATAAAATCAACAATTCATGCGAACATCAACGCCGTCCCCTATCGTTCCCCGCCGTGCGTCCCTGCGTATCAACATCTCCCTCCACCCTCCTCGCCTCCCTCATCACCCTCGCCCAAAACATATGCAACTTCCATTCCAATTCCTTTGTTTTTCACCGCAGAAATGTTAGAGAAACAACGCGCCAGATCGCGATTCTCCTCGTGCTCTTCCAAGAACTCCACGACCGTGGTTCAATCATCCCTCACTCTATCCGCCTCTGCTTCTCTGACCTCCACGTCACCTTCCAGAAGATCCACTTCTTAATGCAAGACTGCTCCCGCGAAAGCGCGCGCCTCTGGATGCTAACGAAATCCCAATTCATCGCTACGCAGTTTCGCGTCCTCGTTCGCGAAGTGGCGATAGTACTAGATGCAATACCCGTGTGTTGCATTGATATAAACAATGAAATAAAAGAGCTAGTTGAGTTAGTGACCAAGCAGGCCAATAGAGGCAACCTCCAACTCGACCGAAACGACGAGAATGAAGCAAAACGACTTCGTTTCCTTCTGGCCCAGCTCGAGAGAGGAATCGAGCCTGACGTGGACGTAGTGAAATCAGTACTCAATTACCTTGAGATAAAAAGTTGGACATCTTGTAACAAAGAGATAAAATTCCTTGAAGACGAATTGGATTTCAATGAGGAAGAGGTTAGTTTGCTGAATAGTTTAATAGGATTCTTGTGTTACTCTAGAGTTGTCATATTTGAAACAATTGATTACCAATCTTCTGGAATGAAACAAATTGAAGCAAAGTGCAGCATGGAGATGCTAAGCTGTGTAGTACCAGAAGATTTCCGGTGTCCGATTTCGCTTGAGATAATGACTGATCCTGTAACCATATCATCTGGCCAGACCTATAACAGAGCCTCAATTCAGAAATGGTTTAATTCAGGAAACCTAATATGTCCCAAAACACGCGAAAAACTTGCCAGCACAGAACTTGTCCCCAACACAGCGCTTAAAAAGCTTATCCAGAAATTCTGTTCCGAAAACGGCGTTATAGTCGTGAATCCGATTGATCATAATCAAACAGTAACCAAAACAAGCGACGCAGGCAGCCCCGCCGCAGCACACGCCATGCAGTTTTTGTCATGGTTTCTCTCCAGGAGGCTCGTGTTCGGAACCGAGGAACAGAAAACCAAAGCAGCGTACGAGATTCGTTTGCTGGCGAAGTCCAGCGTTTTCAACAGGGCGTGTTTGGTGGAAATGGGAACTGTGCCGCCACTTTTGGATCTTCTCGCCGCAGACGACAGAAACTTGCAAGAGAGCGCAATCAGTGCTCTGATGAAGCTCTCGAAGCACACCAGCGGCCAGAAACTCATAATTGAGAGCAGAGGCTTGGCGCCGATTCTCAAAGTTCTCAAAAGAGGGCTCAGCTTAGAAGCGCGCCACGTGGCAGCCGCGGTTATATTCTACCTTTCTTCATCAAAAGAGTACCGAAAACTAATAGGGGAAAACCCCGATGTGATTCCCGCGTTGGTGGAAATGGTGAAAGAAGAAACAACTTTTGGAAAAAACAATTCCGTGGTTGCGATCTTCGGACTTCTCTTGCGTCGGAAAAACCACGCGATTGTGTTATCAGCGGGTGCGGTTCCTGTTCTTGTTAATACGTTAGCTTCTTCGGGTAACGCTAATCTTGTTACAGATTCCTTGGCCGTTCTGGTGGCGTTGGCGGAGAGTGTGGAAGGGGCTTATGCTCTGTTACGAGCAGAGGCGTTGCCTTTGGTGGCTAAGATTTTGCAATCTGCTACTTCGCGCTCAGGGAAGGAGTACTGTGCGTCCATTTTGCTGGCTCTCTGTGTTAATGTTGGTGCGGAAGTGACCGGTGTTCTGGCCAAGGAGGCTTCGGTTATGCCTTCGCTGTATTCGCTTCTGACGGACGGTACTCCTCACGCGGCCAAGAAAGCGCGTGCGCTCATCAATGTTATACTTGAGTTCAGCGACAAGAGGTTTTCTGGAACCGTGGGTTCCTCTGTCTCGCGGCAAAGGTTGGTTAACTTGAACTAG 2052 0.481 MADKINNSCEHQRRPLSFPAVRPCVSTSPSTLLASLITLAQNICNFHSNSFVFHRRNVRETTRQIAILLVLFQELHDRGSIIPHSIRLCFSDLHVTFQKIHFLMQDCSRESARLWMLTKSQFIATQFRVLVREVAIVLDAIPVCCIDINNEIKELVELVTKQANRGNLQLDRNDENEAKRLRFLLAQLERGIEPDVDVVKSVLNYLEIKSWTSCNKEIKFLEDELDFNEEEVSLLNSLIGFLCYSRVVIFETIDYQSSGMKQIEAKCSMEMLSCVVPEDFRCPISLEIMTDPVTISSGQTYNRASIQKWFNSGNLICPKTREKLASTELVPNTALKKLIQKFCSENGVIVVNPIDHNQTVTKTSDAGSPAAAHAMQFLSWFLSRRLVFGTEEQKTKAAYEIRLLAKSSVFNRACLVEMGTVPPLLDLLAADDRNLQESAISALMKLSKHTSGQKLIIESRGLAPILKVLKRGLSLEARHVAAAVIFYLSSSKEYRKLIGENPDVIPALVEMVKEETTFGKNNSVVAIFGLLLRRKNHAIVLSAGAVPVLVNTLASSGNANLVTDSLAVLVALAESVEGAYALLRAEALPLVAKILQSATSRSGKEYCASILLALCVNVGAEVTGVLAKEASVMPSLYSLLTDGTPHAAKKARALINVILEFSDKRFSGTVGSSVSRQRLVNLN* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1545 683 Coils Coil 218 238 - -
Gso6g1545 683 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Gso6g1545 683 PANTHER OS07G0532750 PROTEIN 11 667 - -
Gso6g1545 683 SUPERFAMILY ARM repeat 388 659 IPR016024 -
Gso6g1545 683 PANTHER U BOX DOMAIN-CONTAINING 11 667 - -
Gso6g1545 683 CDD RING-Ubox_PUB 280 322 IPR045210 -
Gso6g1545 683 SUPERFAMILY RING/U-box 269 353 - -
Gso6g1545 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 587 IPR000225 GO:0005515
Gso6g1545 683 Pfam U-box domain 276 346 IPR003613 GO:0004842|GO:0016567
Gso6g1545 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 351 IPR013083 -
Gso6g1545 683 SMART arm_5 449 490 IPR000225 GO:0005515
Gso6g1545 683 SMART arm_5 408 448 IPR000225 GO:0005515
Gso6g1545 683 SMART arm_5 533 574 IPR000225 GO:0005515
Gso6g1545 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515
Gso6g1545 683 Gene3D - 356 671 IPR011989 -
Gso6g1545 683 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1545 Gso-Chr6 15908851 15911150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1545 5 681 U-box Gene Family AT1G10560 38.710 1.65e-161 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1545 - - gmx:100810963 1299.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1545 6 15908851 15911150 Gso6g1545 6 15908851 15911150 ECH