Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1543 ATGGAAATTGTGATTTCCTTGATCATACTCTTTATGGGGATAGCAATTTTGATGGTCATCCATGTCTGCGTCGTGGGGAGGGCCTTCACAGGGAATAACAGCAACAACGAAGAAGAATTTACTCATCGCAGCATCAGTGCCATGAAGAGAATGTTTGGCGGCAACAAGGTTGGTAACCTGAAAAACCTTCCTTGCTTTGAGTACGAGGAGAAAGCATGTAAAGAGAAAGGGTGTTGTGGCCTTGTGGATTGTGCTGTTTGCTTGGAGAATTTTAAGATTGGTGATGTGTGCAGGTTGTTACCCAATTGCGGCCACAGCTTCCATGTACAGTGTATAGATTCGTGGATTCTGCAAACACCCGTTTGTCCCATTTGTAGAACATGGGTTCATTCACCAGTTGTGATGAGGGAACAAAGTGCTGTTTCTGAAAATGTAGAAATATCGACTGCATAG 453 0.4371 MEIVISLIILFMGIAILMVIHVCVVGRAFTGNNSNNEEEFTHRSISAMKRMFGGNKVGNLKNLPCFEYEEKACKEKGCCGLVDCAVCLENFKIGDVCRLLPNCGHSFHVQCIDSWILQTPVCPICRTWVHSPVVMREQSAVSENVEISTA* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1543 150 ProSiteProfiles Zinc finger RING-type profile. 84 126 IPR001841 -
Gso6g1543 150 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 149 - -
Gso6g1543 150 SUPERFAMILY RING/U-box 60 132 - -
Gso6g1543 150 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 149 - -
Gso6g1543 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 132 IPR013083 -
Gso6g1543 150 Pfam Ring finger domain 83 126 IPR001841 -
Gso6g1543 150 SMART ring_2 84 125 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1543 Gso-Chr6 15896697 15897149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1543 40 144 C3H Transcription Factor Family AT4G28890 37.143 1.46e-17 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1543 - - gmx:102662675 317.005