Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1541 ATGATGAAGAAGAGAGTAGCAAGCACCAGCAATGAGTCCTCTAAACTTGATCGCAAAACCATTGAAAGGAACCGCAGAACTCACATGAAATCCCTCTGCCATCAGCTTTCTTCTCTTATTCCTCCCAATCTCAAACCAGCCAAACCCAAGTTGATGCTAGGGCTGCAGGACCAGCTGGATCTTGCAGCAAGGTATATAAGACAAATGACAGAGAGAGTAGAGAAACTGAAGAGGCAGAAGGAGCAAGCCATGTCAAACCAAAGCAATGATGGTAGAAAAATGTTCAACAATAATGTTGAGTCCAAATTGCCAATACTTGAGCTAAGGGACTTGGGTTCCGGCATCGAAGTGATATTGGTGACTGGGTTGAACAAGACATTCATGTTGTACGAAGTTATTAGTGTGCTCGAGGAAGAAGGTGCTGAAGTTGTCACTGCAAGCTTCTCAACTGTTGGGGACAAGATATTTTACGTTGTTCATGCTCAGGCTAAAATATCAAGAGTGGGAGTAGAGACCACGAGGGTGTATAATAGACTTCAAGAGTTTATTGTCCCACCAGAAATCTGGCCGGAAGATGTGTGA 582 0.4381 MMKKRVASTSNESSKLDRKTIERNRRTHMKSLCHQLSSLIPPNLKPAKPKLMLGLQDQLDLAARYIRQMTERVEKLKRQKEQAMSNQSNDGRKMFNNNVESKLPILELRDLGSGIEVILVTGLNKTFMLYEVISVLEEEGAEVVTASFSTVGDKIFYVVHAQAKISRVGVETTRVYNRLQEFIVPPEIWPEDV* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1541 193 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 183 IPR015660 GO:0003700|GO:0006357
Gso6g1541 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 69 IPR011598 GO:0046983
Gso6g1541 193 MobiDBLite consensus disorder prediction 1 21 - -
Gso6g1541 193 PANTHER TRANSCRIPTION FACTOR BHLH162 10 183 - -
Gso6g1541 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 86 IPR036638 GO:0046983
Gso6g1541 193 Coils Coil 59 86 - -
Gso6g1541 193 Gene3D - 13 100 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1541 Gso-Chr6 15861636 15863672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1541 8 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 34.409 2.28e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso6g1541 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1541 - - gmx:100809363 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1541 6 15861636 15863672 Gso6g1541 6 15861636 15863672 ECH
Gso5g0307 5 3195854 3197085 Gso6g1541 6 15861636 15863672 PCT
Gso17g0762 17 7066640 7067915 Gso6g1541 6 15861636 15863672 PCT
Gso6g1541 6 15861636 15863672 Gso5g0307 5 3195854 3197085 PCT
Gso6g1541 6 15861636 15863672 Gso17g0762 17 7066640 7067915 PCT