Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1539 ATGGCCATCAGAGGCGTCAATTTCAAATGGTTCGATGGCCTTTTCTTGTCCATGCTCGCCACCAGCATAGCTATTGTGGCAATTAATTGGAAGCGGTACCAATCTTGTACTCACCCTTTGCACATATGGACTGTGGTTGACTATGCTGCTGTTTTCACTTTCCGGCTTTTGATGTTTGTTGATAACGGGCTTGCTTCGGGAATGGGCTTAGATTTTGGGTGGCCGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTACTTTCAATTCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACAATAGTTGGTACCCTGTGGTTCAGCAACACTAAAATCTGCTTGCCTGGAGGGGGTCAGAAATGGGGCTTCCTTATCTGGTTACTTTTTAGCTACTGTGGACTCCTTTGTATTGCTTGCTTGGCAATGGGGAAGTGGTTGAAACGAAGACAAGCACGTATGTTAGGCGCTCAAGAGGGTATCCCGGTATCCGCATTTGGGGTTCTAATTGAAATGATCCGAGTACCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGAGCATGGCCCAAGATGCTGCATATCATCCTGGACTTTACCTAACTCCAGCCCAGAGAGAAGCGGTTGAAGCTTTAATTCAGGAACTCTCATCGTTCAGGTTGACTGCTGTTCCTACTAATTGCAGTGAATGCCTCATCTGCTTAGAAGAGTTCCATGTAGGAAATCAGGTCCGTGGCCTGCCCTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGGCTTAATGTGAATTGTCCTCGGTGCCGTTGCTCAGTATTTCCTAACCTTGATCTTAGTGCTCTGTCCAATATCCGTTCTGAGTCTGAACAATCTTCTGCCACTGCTGTGACAAGCAGAGATATGACAGGCCAAACTTCTAGTCAGAGTTACCTTCTGAGATTACAGGGGCATCTCCACCCAGTTTGTGTTGACATTGCTGGGCCAGCTGGTGAGACAGATAATGCTTTGGAAAATGCTGAAAATGGTGTTGTACCTGTTGTGACTCTAAATATGTCAACTACAGATCGGGCCGCTTCTGGTGAACACATGCCTGTTACTCTTTCCTCTTCACAAAATTAG 1137 0.46 MAIRGVNFKWFDGLFLSMLATSIAIVAINWKRYQSCTHPLHIWTVVDYAAVFTFRLLMFVDNGLASGMGLDFGWPQRYARFCGRVVVLSILALLLYPFLWAWTIVGTLWFSNTKICLPGGGQKWGFLIWLLFSYCGLLCIACLAMGKWLKRRQARMLGAQEGIPVSAFGVLIEMIRVPDWAFEAAGQETRSMAQDAAYHPGLYLTPAQREAVEALIQELSSFRLTAVPTNCSECLICLEEFHVGNQVRGLPCAHNFHVECIDEWLRLNVNCPRCRCSVFPNLDLSALSNIRSESEQSSATAVTSRDMTGQTSSQSYLLRLQGHLHPVCVDIAGPAGETDNALENAENGVVPVVTLNMSTTDRAASGEHMPVTLSSSQN* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1539 378 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Gso6g1539 378 SMART ring_2 234 274 IPR001841 -
Gso6g1539 378 SUPERFAMILY RING/U-box 233 282 - -
Gso6g1539 378 Pfam Ring finger domain 233 275 IPR001841 -
Gso6g1539 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 280 IPR013083 -
Gso6g1539 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 360 - -
Gso6g1539 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 360 IPR044793 GO:0004842|GO:0010182
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1539 Gso-Chr6 15832528 15838085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1539 58 362 C3H Transcription Factor Family AT3G47990 67.742 5.31e-148 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1539 K16284 - gmx:100808817 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1539 6 15832528 15838085 Gso6g1539 6 15832528 15838085 ECH
Gso4g1532 4 44348601 44353339 Gso6g1539 6 15832528 15838085 GST
Gso5g0309 5 3220253 3226327 Gso6g1539 6 15832528 15838085 PCT
Gso17g0760 17 7042495 7048998 Gso6g1539 6 15832528 15838085 PCT
Gso6g1539 6 15832528 15838085 Gso5g0309 5 3220253 3226327 PCT
Gso6g1539 6 15832528 15838085 Gso17g0760 17 7042495 7048998 PCT