Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1536 ATGAAGAACTTGAAGTGGCACAAGCAAATTTCCAACAGTGGCAACAAGTTGGGGAGAAGGCTTTCGCTTGGTGAGTATAACCGTGCAGTGTCATGGTCCAAGTATTTGGTGTCACCAGGGGCTGAGATAAAGGGTGAAGGAGAAGAGGAATGGAGTGCAGATATGTCTCAGTTGCTCATTGGATCCAAATTTGCCTCTGGAAGGCACAGCAGAATCTACAGAGGGGTTTACAAGCAAAAAGATGTGGCAATTAAGCTGATTAGTCAACCTGAGGAGGATGAGGACTTGGCTGCTTTTCTTGAGAAGCAATTCACTTCTGAGGTGTCCTTGCTCCTCAGATTAGGCCACCCAAATATTATTACTTTTATTGCTGCTTGCAAGAAACCTCCTGTGTTTTGCATAATAACTGAATATTTGGCTGGAGGTTCACTGGGAAAATTCCTGCATCACCAACAACCAAATATACTTCCACTAAAGCTTGTTCTGAAGTTAGCCCTCGACATTGCGCGGGGGATGAAATACCTTCATTCTCAAGGGATTCTTCATAGGGATCTCAAATCAGAAAATCTCCTTTTGGGGGAAGATATGTGTGTAAAAGTAGCAGATTTTGGTATCTCATGCTTAGAATCTCAGTGTGGCAGTGCAAAAGGATTCACCGGAACATACCGTTGGATGGCGCCCGAAATGATCAAAGAAAAGCATCATACCAAAAAAGTAGATGTGTATAGTTTTGGCATAGTTCTATGGGAGCTTTTGACAGGAAAGACTCCATTTGACAATATGACACCAGAACAGGCAGCATATGCAGTTTCGCACAAGAATGCAAGACCTCCATTGCCATCTGAGTGTCCATGGGCATTTAGTGATCTCATCAATAGATGCTGGTCAAGCAACCCTGATAAAAGGCCTCATTTTGATGAGATAGTGTCCATTTTGGAGTACTACACCGAATCACTTCAGCAAGATCCAGAGTTTTTCTCAACTTACAAACCGAGTCCTAGTAGTAGTAACACAATTCTGGGGTGCTTCCCCAAATGCAATGCTCGCCATAAATTTGGTGCATGCAAAGCTTAG 1074 0.432 MKNLKWHKQISNSGNKLGRRLSLGEYNRAVSWSKYLVSPGAEIKGEGEEEWSADMSQLLIGSKFASGRHSRIYRGVYKQKDVAIKLISQPEEDEDLAAFLEKQFTSEVSLLLRLGHPNIITFIAACKKPPVFCIITEYLAGGSLGKFLHHQQPNILPLKLVLKLALDIARGMKYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTGKTPFDNMTPEQAAYAVSHKNARPPLPSECPWAFSDLINRCWSSNPDKRPHFDEIVSILEYYTESLQQDPEFFSTYKPSPSSSNTILGCFPKCNARHKFGACKA* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1536 357 Gene3D Transferase(Phosphotransferase) domain 1 141 338 - -
Gso6g1536 357 SMART serkin_6 58 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1536 357 Gene3D Phosphorylase Kinase; domain 1 48 139 - -
Gso6g1536 357 PRINTS Tyrosine kinase catalytic domain signature 136 149 IPR001245 GO:0004672|GO:0006468
Gso6g1536 357 PRINTS Tyrosine kinase catalytic domain signature 174 192 IPR001245 GO:0004672|GO:0006468
Gso6g1536 357 PRINTS Tyrosine kinase catalytic domain signature 220 230 IPR001245 GO:0004672|GO:0006468
Gso6g1536 357 PRINTS Tyrosine kinase catalytic domain signature 239 261 IPR001245 GO:0004672|GO:0006468
Gso6g1536 357 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672|GO:0006468
Gso6g1536 357 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 334 - -
Gso6g1536 357 Pfam Protein tyrosine and serine/threonine kinase 60 312 IPR001245 GO:0004672|GO:0006468
Gso6g1536 357 ProSiteProfiles Protein kinase domain profile. 58 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1536 357 CDD STKc_MAP3K-like 65 312 - -
Gso6g1536 357 PANTHER SERINE-THREONINE PROTEIN KINASE 1 334 - -
Gso6g1536 357 SUPERFAMILY Protein kinase-like (PK-like) 47 312 IPR011009 -
Gso6g1536 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1536 Gso-Chr6 15784568 15789677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1536 26 321 MAP Kinase Kinase Kinase AT1G62400 62.000 1.44e-134 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso6g1536 PK_Tyr_Ser-Thr 6.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1536 - - gmx:100807757 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1536 6 15784568 15789677 Gso6g1536 6 15784568 15789677 ECH
Gso17g0758 17 7019291 7022816 Gso6g1536 6 15784568 15789677 PCT
Gso6g1536 6 15784568 15789677 Gso5g0311 5 3246741 3250183 PCT