Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1526 ATGGATCTTGAGACAATGTTCAAAGAAAGCTATGTCTCACAGCCAATGGACTTACAAGAAAGCTGCTTGCAACCTAGCATGAAAGATATGCTTCCTTTTGGGAATCTTCCATCTCATGGATTGTTTCAAGATTTTCACCATATTGATCAGTTTCATCACGTGAATGTCTCCTCATCCATCCAAACTCCAAATTTTGATGTTTTTGACAATTTCACCATTACAGGTTCATCACCTGATTTCGATTTTTATGAGTTTAAGCCTTTTGTGGAGGATGGTGGTAATGGGCATGGGCATGCTCATGTTATGGACAATTTCCTTTATGGAAATTATAGCTTGAACCTCCCTCCAAGGAATCAACTAGATATGATGGTTGCAAATCAAAGTTTTTTGCCTTTTAATCCTCAAGAAATCAAGCCCTCCAATTTTGTTGTACCGGATGAAGTTTCACGCATATCCCCGATGAATTATTACAAAAGAGTTGGCGAGAACAAAAATGACAAATCTTATCCAACCACTAGAAGAACATACAAAGTTCGCAAGAAGTCCAACGTAGTAAAGGGCCAGTGGACAATAGAAGAAGATGGGTTGTTGATTCAACTGGTGGAACAATATGGATTGAGGAAGTGGTCTCATATTGCTAAGATATTGCCCGGAAGAATTGGAAAACAGTGCAGAGAGAGATGGCATAACCATCTAAGGCCTGACATTAAGAAGGACACATGGACTGATGAAGAGGATAAAGTACTAATCGAAGCTCATGCTGAGGTAGGAAATAAATGGGCAGAGATTGCTAAAAAGTTGCCAGGAAGAACTGAGAACTCAATTAAGAACCATTGGAATGCAACCAAGAGAAGGCAATATTCCAGAAGAAAGTGTCGCTCAAAATACCCTAGAGGCACTCTTCTGCAAGAGTACATCAAGAGCTTGAACTTAGACAAGAACCCCCCAAGAGATTATAGGAGAAAATCTTCTTCTAATTATTCTAGTGCCATCATGAGTAACAACGAAACCACCACAAGCAAAGTCACTACGACTGCACCAACTTTGCCCCAGACAGCATTTCAATTTTGTGCTGCCACTGATTGCTTGGCACCAAACTATGATTTTAATGTGGTCCCTGATTTCTTCTTTGGCGAGAATTTCTTTGAAGAAGGGTGTAGCATTGATTCTCTTCTGGATGGTGTGCCTTGTGCTCCTCTTATGGATAATATGAAAGATTTTGAAGGAAAATTGCAATGTGATGATCGTACAATGTGTGTTCCTTTTGTTAATATCGATGAGAATCATGTTGAGACAGAGATGCCACTTGAGATGATGGGGGTTGAAGTAAAGAAGGAGCTGGATTTGGTTGAGATGATGTCTCAGATTAGTAATGAAATTCTTCGTGTGTGA 1392 0.3973 MDLETMFKESYVSQPMDLQESCLQPSMKDMLPFGNLPSHGLFQDFHHIDQFHHVNVSSSIQTPNFDVFDNFTITGSSPDFDFYEFKPFVEDGGNGHGHAHVMDNFLYGNYSLNLPPRNQLDMMVANQSFLPFNPQEIKPSNFVVPDEVSRISPMNYYKRVGENKNDKSYPTTRRTYKVRKKSNVVKGQWTIEEDGLLIQLVEQYGLRKWSHIAKILPGRIGKQCRERWHNHLRPDIKKDTWTDEEDKVLIEAHAEVGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSRRKCRSKYPRGTLLQEYIKSLNLDKNPPRDYRRKSSSNYSSAIMSNNETTTSKVTTTAPTLPQTAFQFCAATDCLAPNYDFNVVPDFFFGENFFEEGCSIDSLLDGVPCAPLMDNMKDFEGKLQCDDRTMCVPFVNIDENHVETEMPLEMMGVEVKKELDLVEMMSQISNEILRV* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1526 463 SUPERFAMILY Homeodomain-like 183 279 IPR009057 -
Gso6g1526 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 237 287 IPR017930 -
Gso6g1526 463 Pfam Myb-like DNA-binding domain 189 247 - -
Gso6g1526 463 Gene3D - 185 237 - -
Gso6g1526 463 PANTHER MYB PROTEIN-RELATED 118 312 - -
Gso6g1526 463 PANTHER BNAC03G62830D PROTEIN 118 312 - -
Gso6g1526 463 CDD SANT 240 283 IPR001005 -
Gso6g1526 463 ProSiteProfiles Myb-like domain profile. 233 283 IPR001005 -
Gso6g1526 463 SMART sant 237 285 IPR001005 -
Gso6g1526 463 SMART sant 185 234 IPR001005 -
Gso6g1526 463 ProSiteProfiles Myb-like domain profile. 181 232 IPR001005 -
Gso6g1526 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 181 236 IPR017930 -
Gso6g1526 463 Gene3D - 239 291 - -
Gso6g1526 463 CDD SANT 189 232 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1526 Gso-Chr6 15597647 15599583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1526 81 396 MYB Transcription Factor Family AT4G18770 49.706 6.48e-94 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso6g1526 Myb_DNA-bind_6 6.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1526 K09422 - gmx:102662267 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1526 6 15597647 15599583 Gso6g1526 6 15597647 15599583 ECH
Gso6g1526 6 15597647 15599583 Gso5g0323 5 3366354 3368448 PCT
Gso6g1526 6 15597647 15599583 Gso17g0747 17 6891359 6893369 PCT