Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1504 ATGACAACACGCTTCAAGAAGAACAGGAAGAAGAGGGGCCACGTCAGCGCTGGCCACGGTCGAATCGGAAAGCACAGGAAGCACCCTGGAGGACGCGGTAACGCCGGAGGCATGCACCACCACAGGATCCTCTTCGACAAATACCACCCTGGGTTCTTCGGCAAGGTAGGAATGCGCTATTTTCACAAGCTTCGCAACAAATTCTACTCTCCGATCCTCAACATCGACAAGCTGTGGTCCCTGGTCCCGCAAGAAGTGAAGGACAAGGCCTCCAAGGAGAACAAGGCGCCGCTCATCGACGTCACGCAGTTCGGGTACTTTAAGGTTCTCGGAAAGGGCGTTTTGCCGCAGAACCAGCCCGTTGTGGTCAAGGCCAAGCTTATTTCCAAGATCGCTGAGAAGAAGATCAAAGAGGCTGGCGGCGCCGTTGTTCTCACCGCTTGA 444 0.5518 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLISKIAEKKIKEAGGAVVLTA* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1504 147 MobiDBLite consensus disorder prediction 1 35 - -
Gso6g1504 147 Hamap 50S ribosomal protein L15 [rplO]. 1 146 IPR030878 GO:0003735|GO:0006412|GO:0015934
Gso6g1504 147 SUPERFAMILY Ribosomal proteins L15p and L18e 6 146 IPR036227 -
Gso6g1504 147 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 147 - -
Gso6g1504 147 Gene3D - 58 147 - -
Gso6g1504 147 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 IPR021131 -
Gso6g1504 147 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 147 - -
Gso6g1504 147 ProSitePatterns Ribosomal protein L15 signature. 108 140 IPR001196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1504 Gso-Chr6 15164847 15165623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1504 1 147 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 86.395 7.31e-91 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1504 K02900 - gmx:100798197 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1504 6 15164847 15165623 Gso6g1504 6 15164847 15165623 ECH
Gso4g1577 4 45382073 45382734 Gso6g1504 6 15164847 15165623 GST
Gso5g0345 5 3630891 3631657 Gso6g1504 6 15164847 15165623 PCT
Gso17g0720 17 6596989 6597710 Gso6g1504 6 15164847 15165623 PCT
Gso6g1504 6 15164847 15165623 Gso5g0345 5 3630891 3631657 PCT
Gso6g1504 6 15164847 15165623 Gso17g0720 17 6596989 6597710 PCT