Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1502 ATGGAATCCAAACCCGGTCAAACTATCAAGCTCCTCTGCAGCTACGGCGGCAAGATTCTCCCTCGCGCCACCGACGGCGAACTCCGTTACGCTGGCGGCCACACCAGAGTCCTCACTGTCGCCCGTTCCATTTCCTTTTCAGAATTGATGGTGAAGCTAAGCGAGTTCTGTGGTTCGTCTGTGATCTTGCGGTGTCAATTGCCCAAGGGAGACTTGGAGACCTTGATCTCCATCACCAACGACGAAGATCTCGCTAGCATAATCGAAGAATACGACCGTGCCTCGTTGAAATTGGCGCATCCGTTGAAGATCAAAGCCGTTCTATCGCCGCCGAAATCGTCGAAGAAGACTCCGTCTGCTCCGTCGTCGGCGTCGTCCAGCGCCAGTCACTCTCCGTCCAGATCGCCGCACACCTCCACAGATTCGTTGCCGTACGCGGCGTACCACCGCATCGGCCGCCACAACCGGCCGCCTCCGGCGAAAGCTTCTTGCTACACGCAGTTCGATGGAAGCCCTAGGTTTCTGTACCGTGGACCTCACTGCAATTATTACTGCCACTGA 561 0.5633 MESKPGQTIKLLCSYGGKILPRATDGELRYAGGHTRVLTVARSISFSELMVKLSEFCGSSVILRCQLPKGDLETLISITNDEDLASIIEEYDRASLKLAHPLKIKAVLSPPKSSKKTPSAPSSASSSASHSPSRSPHTSTDSLPYAAYHRIGRHNRPPPAKASCYTQFDGSPRFLYRGPHCNYYCH* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1502 186 PANTHER PB1 DOMAIN PROTEIN 1 186 - -
Gso6g1502 186 SMART PB1_new 23 111 IPR000270 GO:0005515
Gso6g1502 186 CDD PB1_UP2 12 99 - -
Gso6g1502 186 MobiDBLite consensus disorder prediction 112 142 - -
Gso6g1502 186 Pfam PB1 domain 27 97 IPR000270 GO:0005515
Gso6g1502 186 MobiDBLite consensus disorder prediction 109 142 - -
Gso6g1502 186 Gene3D - 29 107 - -
Gso6g1502 186 PANTHER OS05G0427100 PROTEIN-RELATED 1 186 - -
Gso6g1502 186 SUPERFAMILY CAD & PB1 domains 25 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1502 Gso-Chr6 15135051 15136371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1502 7 118 MAP Kinase Kinase Kinase AT1G04700 42.857 6.53e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1502 - - gmx:100797123 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1502 6 15135051 15136371 Gso6g1502 6 15135051 15136371 ECH
Gso4g1579 4 45406974 45408096 Gso6g1502 6 15135051 15136371 GST
Gso17g0715 17 6565079 6568652 Gso6g1502 6 15135051 15136371 PCT
Gso6g1502 6 15135051 15136371 Gso17g0715 17 6565079 6568652 PCT