Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1479 ATGTCTATCACTTCCCTCACCATGGCCGAGTCCTGCCTCCTCTCTTCTCCCTCCTCACTCTTCCACGCCAAAACCAAACCCTCTCTCTTTACACCCCCCTCCAAACCCCTCACACTCCAATTTTCATGCCTCAACTCCTCCGTCTCTCTCTCCCTCGCCGCACCAACTCACCGTTCTCCCCTTGTAACTTTCGTGGCCCAAACTTCCGATTGGGCCCAACAAGAAGAAGAACAGAGCCTCGCTGAAACCGAAGCGGGCCTGGAAAGTTGGGAGCCCAACGGCGAAGACGCCGGCGATGAGAGCTTCGTCGAACCGCCGGAAGAGGCCAAGCTCTTCGTTGGGAACTTGCCTTACGACGTTGATAGCCAGAAATTGGCCATGCTTTTCGAACAGGCCGGAACCGTTGAAATCGCTGAGGTTATTTATAACAGGGAAACTGACCAGAGTCGCGGGTTTGGGTTTGTGACGATGAGTACTGTTGAAGAAGCTGAAAGCGCTGTGGAGAAATTCAACCGCTATGATATCGATGGAAGACTGCTGACTGTTAATAAGGCTTCTCCAAGAGGAACTCGGCCCGAACGCCCACCACCTCGTCGTTCCTTTGAGTCTTCCTTATCAATCTATGTTGGTAATTTGCCATGGGATGTTGACAATACCCGGCTGAAGCAAATTTTCAGTAAACACGGTAATGTTGTGAATGCTCGGGTAGTCTATGACAGGGAGTCAGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGACAGAAATGAATGATGCCGTTGCTGCTCTTGATGGCGAGAGTTTGGACGGAAGGGCAATTAAGGTGAGTGTTGCTGAGGACAGGCCAAGGCGTGGCTCCTTTTGA 873 0.5155 MSITSLTMAESCLLSSPSSLFHAKTKPSLFTPPSKPLTLQFSCLNSSVSLSLAAPTHRSPLVTFVAQTSDWAQQEEEQSLAETEAGLESWEPNGEDAGDESFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAESAVEKFNRYDIDGRLLTVNKASPRGTRPERPPPRRSFESSLSIYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAALDGESLDGRAIKVSVAEDRPRRGSF* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1479 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Gso6g1479 290 MobiDBLite consensus disorder prediction 73 102 - -
Gso6g1479 290 CDD RRM_HP0827_like 207 282 - -
Gso6g1479 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Gso6g1479 290 CDD RRM_HP0827_like 110 185 - -
Gso6g1479 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 277 IPR000504 GO:0003723
Gso6g1479 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 180 IPR000504 GO:0003723
Gso6g1479 290 SUPERFAMILY RNA-binding domain, RBD 105 200 IPR035979 GO:0003676
Gso6g1479 290 Gene3D - 196 290 IPR012677 -
Gso6g1479 290 PANTHER RIBONUCLEOPROTEIN 94 290 - -
Gso6g1479 290 PANTHER RIBONUCLEOPROTEIN 2 84 - -
Gso6g1479 290 Gene3D - 62 195 IPR012677 -
Gso6g1479 290 SUPERFAMILY RNA-binding domain, RBD 196 288 IPR035979 GO:0003676
Gso6g1479 290 SMART rrm1_1 110 183 IPR000504 GO:0003723
Gso6g1479 290 SMART rrm1_1 206 279 IPR000504 GO:0003723
Gso6g1479 290 PANTHER OS02G0815200 PROTEIN 94 290 - -
Gso6g1479 290 PANTHER OS02G0815200 PROTEIN 2 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1479 Gso-Chr6 14910458 14913166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1479 111 290 Eukaryotic Initiation Factors Gene Family AT3G16380 24.444 3.53e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1479 - - gmx:100790280 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1479 6 14910458 14913166 Gso6g1479 6 14910458 14913166 ECH
Gso4g1601 4 45662882 45665948 Gso6g1479 6 14910458 14913166 GST
Gso5g0363 5 3807516 3810163 Gso6g1479 6 14910458 14913166 PCT
Gso17g1060 17 10045885 10048296 Gso6g1479 6 14910458 14913166 PCT
Gso6g1479 6 14910458 14913166 Gso5g0363 5 3807516 3810163 PCT
Gso6g1479 6 14910458 14913166 Gso17g1060 17 10045885 10048296 PCT