Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1477 ATGGCTGGGAAAACTCAAACTCACTACTTTCTTCTCTTGTTTCTCTTCTTAATCTCCATCAACGCCAAACTTGATCTCTACCCTTCAGACTACAAGGCACTCCTAACTCTGCAGAAGGACCTCGGAGTCAACGGTCAAGTCTCCGCAACTCTGGCTTGCGAAACAGAGGGCGTGTTCTGCGAGCGGAGGAAGCTCTCCGGCAAGGAAACCTACGCCCTCCGAATCACCAGACTCGTCTTCAAATCCAACAACCTCAACGGTGTTCTGTCCCCTTCCATTGGACGCCTCACGGAGCTCAAAGAACTCTCTCTCTCCGACAACAACCTCTTTGGCCGACTCCCTCCCCAAATCTTTGACTGCAGAAAGCTCCAAATCCTCGACCTCGCCAACAACCTCTTCTCCGGCCCAGTCCCCCCAGAGCTCTCCTCCCTCACGCGCCTCCGCGTGCTGGACATCTCCACCAACAGGCTCTCCGGCAACCTCAATTTCCTCAAATACTTTCCCAATTTGGAAACTCTCTCCGTCGCCGACAACCTCTTCACCGGAAGAGTCCCTCCCTCCGTCCGCTCCTTCCGTAACCTCCGCCAATTCAACTTCTCCGGTAACCGCTTCCTCGAGCCCTCTCTACAATCATCCTCACCAGAAACAATTCTCTCCAGACGTTTTCTGTTAGACGGCGACGGTGATGTTCCTGCTCCTGCTCCTGCACCTGCACCTAATAACTCAAACAAGAAGAAAAAATCCAATGCTTCTTCTGGTGCTGCTGCTGCACCAGGTCCCGCACCGAACAACCACAAGCACAAGAAAAGTAGGAGAAAACTCTTAGGGTGGATTCTGGGGTTTGTGGCAGGGGCAGTGGCGGGAATCTTAGCAGGATTCGTGTTTTCTCTAATGTTCAAGCTGGCTCTGGCGTTGATAAAAGGAAGAGGAAGGAAAGCGGGGCCTGATATCTACAGTCCATTGATAAAGAAAGCAGAGGATTTGGCCTTCTTGGAGAAAGAAGAAGGAATGGCATCGTTGGAAATCATCGGGCGAGGTGGCTGCGGAGAGGTTTACAAGGCCGAGTTACCGGGAAGCAACGGGAAAATGATCGCTATAAAGAAAATAATTCAGCCTCCCAAAGAGGGTGCTGAGTTAGCAGAAGAGGACAGCAAGGTTCTGAACAAGAAAATGAGGCAAATTCGATCTGAGATCACTACAGTGGGACAAATCAGGCACCGAAACCTTCTTCCTTTGCTGGCCCACGTGTCTAGGCCGGGATGCCACTACCTTGTTTACGAGTTCATGAAGAATGGCAGCTTGCATGACACCCTGAGCAAGGTTGAGGTGGGCGAGTTCGAGTTGGATTGGTTGTCAAGGCACAAGATCGCTCTCGGTGTGGCCGCTGGACTCGAATACCTTCACTTGAATCACAACCCTCGGATCATTCATAGGGATCTCAAGCCTGCTAACATTCTTCTTGATGATGACATGGAGGCCCGAATTGCTGATTTCGGCCTCGCCAAGGCCATGCCTGATTACAAGACTCACATTACAACCTCCAATGTGGCTGGAACTGTGGGCTATATTGCTCCTGAGTATCATCAGATACTCAAGTTCACTGATAAGTGTGATATTTACAGCTTTGGCGTCATACTTGGGGTGTTGGTCATTGGGAAGCTTCCTTCTCATGAGTTTTTTCAGCACACTGAAGAGATGAGTTTGGTCAAGTGGATGAGGAAGATTTTGAGTTCCGAGAATCCCAAGGAGGCTATTGATACAAAGCTGCTGGGGAATGGGTATGAGGACCAGATGCTTCTTGTTTTGAAGATTGCATGCTTTTGCACTATGGATGATCCAAAGGAAAGGCCTAACAGTAAGGATGTTTGGTGCATGCTGTCACAGATTAAGCACTGA 1896 0.4989 MAGKTQTHYFLLLFLFLISINAKLDLYPSDYKALLTLQKDLGVNGQVSATLACETEGVFCERRKLSGKETYALRITRLVFKSNNLNGVLSPSIGRLTELKELSLSDNNLFGRLPPQIFDCRKLQILDLANNLFSGPVPPELSSLTRLRVLDISTNRLSGNLNFLKYFPNLETLSVADNLFTGRVPPSVRSFRNLRQFNFSGNRFLEPSLQSSSPETILSRRFLLDGDGDVPAPAPAPAPNNSNKKKKSNASSGAAAAPGPAPNNHKHKKSRRKLLGWILGFVAGAVAGILAGFVFSLMFKLALALIKGRGRKAGPDIYSPLIKKAEDLAFLEKEEGMASLEIIGRGGCGEVYKAELPGSNGKMIAIKKIIQPPKEGAELAEEDSKVLNKKMRQIRSEITTVGQIRHRNLLPLLAHVSRPGCHYLVYEFMKNGSLHDTLSKVEVGEFELDWLSRHKIALGVAAGLEYLHLNHNPRIIHRDLKPANILLDDDMEARIADFGLAKAMPDYKTHITTSNVAGTVGYIAPEYHQILKFTDKCDIYSFGVILGVLVIGKLPSHEFFQHTEEMSLVKWMRKILSSENPKEAIDTKLLGNGYEDQMLLVLKIACFCTMDDPKERPNSKDVWCMLSQIKH* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1477 631 Gene3D Ribonuclease Inhibitor 29 141 IPR032675 -
Gso6g1477 631 Coils Coil 377 397 - -
Gso6g1477 631 SUPERFAMILY Protein kinase-like (PK-like) 335 626 IPR011009 -
Gso6g1477 631 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 7 631 - -
Gso6g1477 631 SMART serkin_6 337 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1477 631 Gene3D Transferase(Phosphotransferase) domain 1 429 631 - -
Gso6g1477 631 Gene3D Ribonuclease Inhibitor 142 223 IPR032675 -
Gso6g1477 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Gso6g1477 631 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 631 - -
Gso6g1477 631 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Gso6g1477 631 ProSiteProfiles Protein kinase domain profile. 337 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1477 631 Pfam Protein kinase domain 339 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1477 631 Gene3D Phosphorylase Kinase; domain 1 328 428 - -
Gso6g1477 631 MobiDBLite consensus disorder prediction 229 268 - -
Gso6g1477 631 SUPERFAMILY L domain-like 53 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1477 Gso-Chr6 14886060 14888278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1477 10 631 Receptor kinase-like Gene Family AT2G31880 62.853 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Gso6g1477 Pkinase 1.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1477 - - gmx:100788151 1186.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1477 6 14886060 14888278 Gso6g1477 6 14886060 14888278 ECH
Gso4g1605 4 45693006 45695244 Gso6g1477 6 14886060 14888278 GST