Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1473 ATGACAAGCACTCTTCTGTCTTTGCTTTTCTTGCTCTTCTCCCTTCTCATTCCATCCTTCATTTCCTCTTCACCAGTTCGAAACCCTGAAGAAGTCGTACAAGAGGTCAACAGGAAAATAAATGGGTCTATAGCAAGGCCTAGGAGAAACTTGGGCTACCTCTGGTGTGGCAGTGGCAACCCCATTGATGACTGTTGGAGGTGCGACCCCAACTGGGAGCAGAACAGGCAGAGGCTAGCTGACTGCGCAATCGGGTTCGGCAAGAACGCCATCGGCGGCAGGGACGGCAAGATCTACGTGGTGGACGACGACGGCGACGACGATGCCGTAAACCCGAAGCCGGGAAGCCTCCGGCACGCCGTGATCCAAGACGAGCCCTTATGGATAATCTTCGCAAGAGACATGGTGATCCAGCTGAAGGAGGAGCTTCTCATGAACTCCTTCAAGACCATCGACGGAAGAGGCGCCAGCGTGCACGTTGCTGGGGGTCCATGCATAACGATACAGTACGTGACCAACGTCATCATCCATGGGATTCACATTCACGATTGCAAACAGGGAGGGAACGCTATGGTGCGGGACTCCCCACGGCACTACGGGTGGAGAACCGTGTCGGACGGCGATGGCGTGTCGATCTTCGGAGGGAGTCATGTATGGATCGACCATTGCTCGCTCTCTAACTGTAACGATGGGTTGATCGACGCCATCCATGGCTCCACCGCTATTACCATTTCTAATAACTACATGACGCATCATGATAAGGTCATGTTGTTGGGTCACAGCGATGCTTACACCCAGGACAAGGCCATGCAAGTCACTATTGCTTTCAACCACTTTGGTGAAGGCCTTGTTCAAAGGATGCCAAGGTGTAGGCTTGGGTATTTCCATGTGGTGAACAATGATTATACTCACTGGGAAATGTATGCCATTGGTGGAAGTGCTAATCCAACCATCAACTGCCAAGGCAATAGGTTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAACGTGAAGATGCGCCAGAGAGTGAGTGGCAGGATTGGAATTGGAGGTCAGAAGGGGACTTGTTAGTAAACGGTGCGTTTTTCACATCATCGGGTGCTGGAGCCTCCTCTAGCTATGCAAGGGCTTCTAGCTTAAGTGCAAGACCATCTTCCCTTGTTGGTTCCATAACAACAGGTGCTGGTGCACTCAGTTGTAAGAAAGGTTCTCCTTGCTGA 1227 0.5151 MTSTLLSLLFLLFSLLIPSFISSSPVRNPEEVVQEVNRKINGSIARPRRNLGYLWCGSGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAIGGRDGKIYVVDDDGDDDAVNPKPGSLRHAVIQDEPLWIIFARDMVIQLKEELLMNSFKTIDGRGASVHVAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDAYTQDKAMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINCQGNRFVAPDDRFSKEVTKREDAPESEWQDWNWRSEGDLLVNGAFFTSSGAGASSSYARASSLSARPSSLVGSITTGAGALSCKKGSPC* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1473 408 PANTHER PECTATE LYASE 1 405 - -
Gso6g1473 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Gso6g1473 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Gso6g1473 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Gso6g1473 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Gso6g1473 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Gso6g1473 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Gso6g1473 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Gso6g1473 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Gso6g1473 408 SMART amb_all 134 331 IPR002022 -
Gso6g1473 408 SUPERFAMILY Pectin lyase-like 60 399 IPR011050 -
Gso6g1473 408 PANTHER PECTATE LYASE 18-RELATED 1 405 IPR045032 GO:0030570
Gso6g1473 408 Pfam Pectate lyase 144 325 IPR002022 -
Gso6g1473 408 Gene3D - 59 401 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1473 Gso-Chr6 14839390 14842119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1473 1 408 Polysaccharide Lyase AT5G63180 78.832 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1473 K01728 - gmx:100787082 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1473 6 14839390 14842119 Gso6g1473 6 14839390 14842119 ECH
Gso4g1611 4 45765647 45768123 Gso6g1473 6 14839390 14842119 GST
Gso5g0370 5 3869698 3871849 Gso6g1473 6 14839390 14842119 PCT
Gso6g1473 6 14839390 14842119 Gso5g0370 5 3869698 3871849 PCT