Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1472 ATGATGGATGGGCGGCGGCATTCGGTCGATATTCCAATTTCCAAAACTCTTGTGGCACTGAGGAGAGTCAGGTCATTGAGGGATCCAACCACTAATTCCATGAGCAAACTCTCTTCTCTGGTTGACAATGTGCACTGGGAAAACGGTTCTGGCAATGAGATTTCCCTGCGGTTTTCGGATGCTGCTGGGCCATGTGATTCTGATGATAATGCTGCTTTCAGATCAAGGAATTTAGGTTTCAAGGGACATAGGAAGCCGGATGATGCTGATTTTTTATTGAATCATGGCCTGTTGAACTCAAGGTTGAAGCCTAGTGGGATGATGTCTTGTAAGGATGATCAACAAGATGATGAAATGGTTCACTCTAAGCCTAATCTGCAGTGCATTTCAGGAGATAAATCACCCAGTGAAAGCTGTGGTAGCAACCTTGGGGGTAAAGGATTGGACTTGTCTTGTATTGTGCTTCCAAGTAATAATTTCAAGGATGGGGATTCATGCTATATAGAAACTGCTAGATCATCTCAATTAGGGAGAACAGATTACTCCAAGTCAGCCAAAAAGTCTCTACGCAAGAATCAAGTAAAACCGTCGGAGGTAGCGATAAGTATTGCTAGCAATGAAGGCAGTCCATGTCCTTCTGGTTATGATGCTTTTTCGCCTTATAGTGCTAAAGTAGGTATAAATCAAGATGTTGATGTTTTAGATAACAATGATGATGGATGTGGAATAAGCTGCTGTTGGTCGAAATCACCAAGGTTTAGAGAATCAAATCTATATGGTGAGATAGAAGACCGTCCCTTGATATCTCATCGAGTTGATGAGACGGATCTTGAAGCACACAGGAGCATGAGACACAATGGTGGTGGGATTAGTCCAACTTTGGAAACTCCTAGAAGTTTGTCTATGAAATTCAGGCCTAAATCATTTAGTGATTTGGTGGGACAAAATGTGGTAGTAAGGTCTCTTTTGGCTGCCATCTCCAGAGGAAGGATAACATCATTTTATCTCTTCTATGGTCCACGCGGCACCGGCAAGACATCCGCGTCTAGGATGTTTGCCGCTGCACTGAATTGCCTGTCTGTTGTGGAGAAAAGGCCATGTGGTCTATGCAGAGAATGTGTTTTGTTATTTTCTGGAAGAAATAAAGATGTTAAGGAAGTGGATTCTGTGACAATCAATCGCGCGGAACAGGTTAAATCCCTTATCAAGAATGCAAGCATCCCTCCGGTTTCCTCACGTTTTAAGGTTTTCATTATTGATGAGTGTCAGTTATTGAATGGGGAGACGTGGGCAAGCATTTCAAATAGCCTAGAGAACCTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCGAAGTGCAGTTTCCCGGGCTCAGAGGTATCACTTTCCGAAGGTTAAAGATGCCGACATTGTATGCAGACTAGAAAAAATTTGTGCCGAAGAAGGCCTTGATTTTGAACAGGATGCTTTGGACTTTATCGGTGCAAAATCCTGCGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGCTTGCTTGGTAAAAAGATCAATATTTCTTTAGCTTACGAGCTTACTGGGATCGTTTCCGATGATGAGTTGCTTGATTTGCTGGATCTGGCTTTGTCATCTGATACATCGAATACAGTTATAAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCACCTTGTATCTCAGCTGGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGAAAATGGTGGTTCTGACGTCAGAAGTAGATTTTCTCGGAGACACAACTCTGAAGCTGATCTTCAGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAGCAGTTAAGAAATTCGAAGAATCAAACAACATGGTTCATTGTAGCTCTCCTACAGTTAAGCTCTGTAGATTGTCAATCTGTGGATGCAAATGATACCAAGTTGAGTCTTAGAGGTGCATGCAATGGAGGGCAAAGGTTGGAACATGTTACTACAGGCCTTTGTGATAACAAGTCATACAGATTAGAACCAGAGGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCTACAGAGATGTGTCACTCTAGTCAGCTCAAAACTTTTTTCAGGAACAAGGGGAAGTTGTCTTCACTTCATGTTGATGGCAGTACAGCTTGTCTTGCTATTGCCGAGTTGGAGTTCCACCATCGCCACCATGTATCCAAGGCTGAGAAGTCATGGAAAGCGATTGCAAGTTCCTTGCAGTTCATATTGGGTTGCAACATTGAGTTGAGGATCACCTATGCACCGTGTGCTTCTGATTCCAAGTATGCCAAACTTAGATCATCTTTCAGTATCTTCGGTTGCTCTCGCAGAATTCGTCAACAGAAGTCCTTATCATCTAATGAACAAGCAAGTGAATCAGATTACGCTGACTACACCTCGGAAAATCCCATGATGAAGGATAGAATTTCTACCTCTGATTGTGGAATGGATGCTGTAACGGCTTTGAGGAGTAGCGAAGGGAATTTGCTCAGCTCAGGAGAAAGATTTTTGAATAGGTCATTTCAAGAGACTAAGAGAACATCAAGTGCTGAAGTGGATTTCTCTAAAGAAGAGGGATACAATTGTGCACATCTTGATCCATCAATGCTTGATTCAGATAATAACCACCAATCTAACTGTTTTCCTAAAACTCTTTGGCTTCAAAAGAAGTTCCGATCTTCACATTCATCCAAGTTGACTTTTCAGGGTATTCAACCACAGAAAGATTTTGTTATATCTGTCCCAAAAATGTGTGCATGTTCTGGGACATATACCTATGCTAACGAACCCAGCATTTTTTCAAGTAGTTGTAAGAACTGCACCAAAGCCTCAGAAAAAGTAGGTTGA 2913 0.4185 MMDGRRHSVDIPISKTLVALRRVRSLRDPTTNSMSKLSSLVDNVHWENGSGNEISLRFSDAAGPCDSDDNAAFRSRNLGFKGHRKPDDADFLLNHGLLNSRLKPSGMMSCKDDQQDDEMVHSKPNLQCISGDKSPSESCGSNLGGKGLDLSCIVLPSNNFKDGDSCYIETARSSQLGRTDYSKSAKKSLRKNQVKPSEVAISIASNEGSPCPSGYDAFSPYSAKVGINQDVDVLDNNDDGCGISCCWSKSPRFRESNLYGEIEDRPLISHRVDETDLEAHRSMRHNGGGISPTLETPRSLSMKFRPKSFSDLVGQNVVVRSLLAAISRGRITSFYLFYGPRGTGKTSASRMFAAALNCLSVVEKRPCGLCRECVLLFSGRNKDVKEVDSVTINRAEQVKSLIKNASIPPVSSRFKVFIIDECQLLNGETWASISNSLENLSQHVVFVMITPDLDKLPRSAVSRAQRYHFPKVKDADIVCRLEKICAEEGLDFEQDALDFIGAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTGIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLHLVSQLANLIMDILAGKCENGGSDVRSRFSRRHNSEADLQKLNNALKILSETEKQLRNSKNQTTWFIVALLQLSSVDCQSVDANDTKLSLRGACNGGQRLEHVTTGLCDNKSYRLEPEDHKGTLDSIWYKATEMCHSSQLKTFFRNKGKLSSLHVDGSTACLAIAELEFHHRHHVSKAEKSWKAIASSLQFILGCNIELRITYAPCASDSKYAKLRSSFSIFGCSRRIRQQKSLSSNEQASESDYADYTSENPMMKDRISTSDCGMDAVTALRSSEGNLLSSGERFLNRSFQETKRTSSAEVDFSKEEGYNCAHLDPSMLDSDNNHQSNCFPKTLWLQKKFRSSHSSKLTFQGIQPQKDFVISVPKMCACSGTYTYANEPSIFSSSCKNCTKASEKVG* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1472 970 Pfam DNA polymerase III, delta subunit 315 472 - -
Gso6g1472 970 Gene3D - 473 535 - -
Gso6g1472 970 Coils Coil 604 634 - -
Gso6g1472 970 CDD AAA 313 463 - -
Gso6g1472 970 MobiDBLite consensus disorder prediction 805 824 - -
Gso6g1472 970 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 110 945 - -
Gso6g1472 970 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 110 945 - -
Gso6g1472 970 Gene3D - 293 470 IPR027417 -
Gso6g1472 970 SUPERFAMILY post-AAA+ oligomerization domain-like 542 644 IPR008921 GO:0003677|GO:0006260
Gso6g1472 970 MobiDBLite consensus disorder prediction 805 820 - -
Gso6g1472 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 521 IPR027417 -
Gso6g1472 970 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 299 645 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Gso6g1472 970 Gene3D - 536 649 - -
Gso6g1472 970 CDD HLD_clamp_pol_III_gamma_tau 472 535 IPR045085 -
Gso6g1472 970 SMART AAA_5 331 474 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1472 Gso-Chr6 14811568 14816663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1472 290 634 Core DNA Replication Machinery Family AT1G21690 24.069 2.95e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1472 - - gmx:100812040 1907.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1472 6 14811568 14816663 Gso6g1472 6 14811568 14816663 ECH
Gso4g1612 4 45795221 45800751 Gso6g1472 6 14811568 14816663 GST