Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1468 ATGGGAGTAGTTTCTGAAGGAAACGGCGACGTTTTACCATGGCTGAAATCGATGCCGGTGGCGCCGGAGTACCGGCCGAGCGCCGCGGAGTTTCAAGATCCTATAAGTTACATATTCAAGATCGAGAAGGAAGCTTCCAAGTACGGAATCTGCAAAATCATCCCTCCCTTCCCACCTTCTTCCAGGAAGACCGCAATCGCCAACCTCAACCGCTCACTCGTGGAGACCGGCTCCACATTCACCACGCGCCAGCAGCAGATCGGCTTCTGCCCCCGCAGGCCCAGGCCCGTCCAGAGGCCCGTCTGGCAGAGCGGTGATCGCTACACCTTCACCGAGTTCGAGTCCAAGGCCAAGTCCTTTGAGAAGACATACCTCAAACGCCACGCCAAGAAGGCCTCTGGCCTTGGCCCGGGCCCTCTGGAGACTGAAACGCTGTTCTGGAAGGCGACGCTGGACAAACCGTTCTCCGTGGAATACGCGAACGACATGCCGGGGTCAGCCTTTTCCCCGAAATGCAGGCGCGTAGGGGATCCAAGCTCACTGGCGGACACTCAGTGGAACATGAGAGCGGTTTCGAGGGCCAAAGGTTCGCTCTTACAGTTCATGAAAGAGGAGATTCCGGGCGTTACTTCTCCTATGGTCTACGTTGCCATGCTCTTCAGCTGGTTCGCGTGGCATGTTGAGGATCATGACTTGCACAGCCTCAATTACCTCCACATGGGCGCCGGCAAGACCTGGTACGGCGTCCCCCGTGACGCCGCCGTTGCTTTCGAGGAAGTCGTTAGGGTTCACGGCTACGGCGGAGAGATTAACCCGCTCGTCACTTTTGCTACTCTTGGTGAGAAAACCACAGTGATGTCTCCTGAAGTATTAATTAGCGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTTGTGACGTTTCCCAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGCGGAGAGGCAGCGAACATTGCAACACCTGAATGGTTGAGGTTTGCTAAAGATGCTGCAATTCGGAGGGCTTCATTAAATTATCCTCCCATGGTTTCACACTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGTGAGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGGGTGAAGGAGAGACTGTAACTAAAGAACTATTTGTCCAAGATGTGTTACAGAACAATGATCTGCTTCATATACTTGGGAAAGGATCTGATGTAGTACTTCTTCCTCGTAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAACAATCCATCAATGTAAGAAATTCTGAGGGAATGCATTCCTCAAAAGGTTTTGTTTCAGATGATCTGGTATTCAACAGGAGTCCAGGAATCAAGCAAGAAAAAAGTTTCTATTTTGTGAAAGACAAGTTTACTACATTGTGTGAAAGGAACAGGATTTCCACTTTTAATGTAAATGGTAACATAAGCACTGCAAGCTCTAATCCACTTCAAAGAGACAATGATAGAGAAACTAGTCAAGGAGATGGGTTATCAGATCAGAGATTGTTTTCATGTGTAACATGTGGAATATTATGCTTTTCCTGTGTTGCAATTGTACAGCCCAGAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTATCTAGCAATAAGCTTACTATTGCCCATGAAGATGCAACTATTACCGAGCCAAATATGTATACAGGATGGATGAAAAATAATGTCCAAGATGGTAAACATGATGTTACTGTTCAATCTTCTCGGGAGGCTTTAAATACTGAAAGTGAAAATGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCATCTGACTCTGAGGAAGATCATATTACAGATGACAGTCATGAATCAAATGTGATAAACTCTGCTTCAGAATGTTTACTTTCTCATACTCAAAATTCCCATGCTAGTCCCATGACTGCACTTGACAGGGATGACAATATTCCTTCAACGAGTGCCACTTGTGAGAATTTTATGCATCGTAGATTTGAATGTAATTTGAATCATCAGTCTGTAGACCACTCTTTAAAGAAACCGGATTATCATATTACATCAGAGGTTAAATTTGAAAATACAAAGATGGTGCCTAATTTCACCTCTAATTGTTCCCAACACACTCATGATGCTGACAGGTCATTGTCTAACAAGTCTATGGTTCCCTTTGATAATAAAAATACTTCGATGGTGCTACAATCTGATGAAGACTCATCCAGAATGCATGTTTTTTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATAGGTGGAGCCCACATGTTGCTCCTATGTCATCCAGATTATCCCAAGATAGAGTCTGAAGCAAAAATGGTGGCAGAAGATTTGGGGATTGATTATATGTGGAAGAATATTGCATACAGGCATGCTTCCACAGAGGATGAGGAGAGGATCCAGTCAGCTCTGGACAATGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTATTCATTTGGTTGTAGCTCTCTAGCAAGCTCACCCATAGAACCAAAGGTCTACCAAAGAAGGGTCAACAGGCAGAAAAAGGTTGTTGCTGGAAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAAAAAGAGACTCTGAAGATGTTGAGGATGAGAAACTCATACTTGGGTGGATATTACCTGATGAGAAATTTGAGAAATCAGGAAGTACCCCCAAAAGAGAAACTACTAGCAGAAAATCAGGTAAGAAAAGGAAAATGACAGCAGAGAATGGACGACCCAGGAAAGGAAGTTATGCTAAGAAAAATTTAGTTGCTGATAATTCCACTGAAGATAAACACAACTCACAGCCAAGGAGGATTCTTAGAAATAAGAAAGCTAGGTTTGTTGAAAGAGACCATGCTGCTTTGAAAGGGGATTATTCTCCTTCATATCATCGGAAACCTATAAGCAAGCAAGCAAACTGCTCTGAAAGTGATGCAGTTTCGGATGATTCGCTTGATGATGATGATCACATGCAGCAAAGCAGAAATGTTAAAGTTGAAAAGGCTAAATTTATGGACAATGATGTGGTTTCAAATGATACGATGGACTATGACTCTGATTGCCAGCAGAGGGAAGAACATAGCAGCAAGCAAGTTGAAGATATGGAGAGAGATGCAAATTCAGAAGATTTTTTGGATGTTGGTTCTCTTCAGCTGCAACGGAAGACTTCCAGAGCCATGCATGCCAAAAGCATCAATGAAGAAGATATAATTTCTGATGACCAAATGGAGAGTCCTTTTCGAAAGAGGCAAAAGAGAATTCCTAAAAACAGGCAGGGCAAATACCTTACTGGAAAAGATATAATATCTGACAACCAACTAGAGCTGAAAATGAAGAAGCAGCAACGGATGAATCCTAAAAGCAGGCAAGCCAAATACCTCAACGAAGAGGATATTGCATCAGATGACCAATTGGAGGACCATTATCGTAGATATCAAAGGAATCCTAAAGGCAGACAGGCCACATGTGTAGCAGGGGAAGATGAAATGTCTGATGACCAATTGGAGAATCATTGTCAGAAGCAGCAAACAAATTTCTCTAGGAAAAGGCAAAACAAAGGCAATGTTAGAGAGGTTAAAAACGAAATGTGTGATGACCAATTGGAGGACCATTTTCTGAAGCAGCATAGAAGATTTCCTAAGAGCAGGCAAAATAAACACACTGAGAAAGAAGTCATGAATGACTTAGCTGAGAATAATTCTCATCTGCTGCATAGAACTCCTAAAAGGAAGCAAGCTAAATGCATGGAAGATGATATGAATTCAGATGATGAAATGGAAGATGATCAGCCGCTGAGGAGAGCACTTCGAAGTAAACAAGCTAAACCAAAGACACTTCTGAAACAAGCTAATTCCTTCCAAGCAAAAAAGCAGGCATCTCGGCCCATCAAACAGGGCTCTCGGTTGCTTGTGAAATCAAAGGCTCCTCAGCAAATAAAACAGCCTGCTCATTTGTGGAATAAGCAATCTAATAACACTCAGGAATTTAGTTTATATATGGAAGAGGAGGAAGATGGTGGACCTAGCACACGCCTTAGGAAGAGAGCCACAAAAGCTCAGGAATCTGAAGGAAAATTGAAAGACAAGCAAACAAAAAGGAAGAAGGTGAAGAATGCTGCAGCTGCAAAGGTTTCGGTTGGCCATGCCAAAATGAAGGATGGGGAAGCAGAATATCGGTGTGATATTGATGGGTGCGCTATGAGTTTTGGGTCGAAACAGGAGCTGATGCATCATAAGAAAAACATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAGCACCGTCGAGTTCATGAGGATGAGCGCCCGTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACCGAGCACATTCGAGTCCACACTGGTGCAAGACCTTATGTATGTGCCGAGCCAGATTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAATTGTCAATAG 4761 0.4369 MGVVSEGNGDVLPWLKSMPVAPEYRPSAAEFQDPISYIFKIEKEASKYGICKIIPPFPPSSRKTAIANLNRSLVETGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDRYTFTEFESKAKSFEKTYLKRHAKKASGLGPGPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRRVGDPSSLADTQWNMRAVSRAKGSLLQFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFATLGEKTTVMSPEVLISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPVSISAEPRSSRLKDKKGEGETVTKELFVQDVLQNNDLLHILGKGSDVVLLPRSSVDISVCSKLRVGSQQSINVRNSEGMHSSKGFVSDDLVFNRSPGIKQEKSFYFVKDKFTTLCERNRISTFNVNGNISTASSNPLQRDNDRETSQGDGLSDQRLFSCVTCGILCFSCVAIVQPREPAARYLMSADCSFFNDWVVGSGVSSNKLTIAHEDATITEPNMYTGWMKNNVQDGKHDVTVQSSREALNTESENGNTALALLASAYGNSSDSEEDHITDDSHESNVINSASECLLSHTQNSHASPMTALDRDDNIPSTSATCENFMHRRFECNLNHQSVDHSLKKPDYHITSEVKFENTKMVPNFTSNCSQHTHDADRSLSNKSMVPFDNKNTSMVLQSDEDSSRMHVFCLEHAAEAEQQLRPIGGAHMLLLCHPDYPKIESEAKMVAEDLGIDYMWKNIAYRHASTEDEERIQSALDNEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYSFGCSSLASSPIEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKLILGWILPDEKFEKSGSTPKRETTSRKSGKKRKMTAENGRPRKGSYAKKNLVADNSTEDKHNSQPRRILRNKKARFVERDHAALKGDYSPSYHRKPISKQANCSESDAVSDDSLDDDDHMQQSRNVKVEKAKFMDNDVVSNDTMDYDSDCQQREEHSSKQVEDMERDANSEDFLDVGSLQLQRKTSRAMHAKSINEEDIISDDQMESPFRKRQKRIPKNRQGKYLTGKDIISDNQLELKMKKQQRMNPKSRQAKYLNEEDIASDDQLEDHYRRYQRNPKGRQATCVAGEDEMSDDQLENHCQKQQTNFSRKRQNKGNVREVKNEMCDDQLEDHFLKQHRRFPKSRQNKHTEKEVMNDLAENNSHLLHRTPKRKQAKCMEDDMNSDDEMEDDQPLRRALRSKQAKPKTLLKQANSFQAKKQASRPIKQGSRLLVKSKAPQQIKQPAHLWNKQSNNTQEFSLYMEEEEDGGPSTRLRKRATKAQESEGKLKDKQTKRKKVKNAAAAKVSVGHAKMKDGEAEYRCDIDGCAMSFGSKQELMHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKRKTGHSAKKNCQ* 1587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1468 1586 Pfam JmjC domain, hydroxylase 213 331 IPR003347 -
Gso6g1468 1586 SMART cupin_9 180 349 IPR003347 -
Gso6g1468 1586 MobiDBLite consensus disorder prediction 1312 1331 - -
Gso6g1468 1586 ProSitePatterns Zinc finger C2H2 type domain signature. 1525 1547 IPR013087 -
Gso6g1468 1586 PANTHER LYSINE-SPECIFIC DEMETHYLASE 6 1576 - -
Gso6g1468 1586 SUPERFAMILY beta-beta-alpha zinc fingers 1509 1551 IPR036236 -
Gso6g1468 1586 MobiDBLite consensus disorder prediction 506 525 - -
Gso6g1468 1586 ProSiteProfiles JmjN domain profile. 21 62 IPR003349 -
Gso6g1468 1586 Gene3D Cupin 14 353 - -
Gso6g1468 1586 Gene3D Classic Zinc Finger 1521 1549 - -
Gso6g1468 1586 Gene3D Classic Zinc Finger 1491 1520 - -
Gso6g1468 1586 MobiDBLite consensus disorder prediction 963 994 - -
Gso6g1468 1586 MobiDBLite consensus disorder prediction 963 1122 - -
Gso6g1468 1586 ProSiteProfiles JmjC domain profile. 180 349 IPR003347 -
Gso6g1468 1586 Pfam jmjN domain 22 55 IPR003349 -
Gso6g1468 1586 SUPERFAMILY beta-beta-alpha zinc fingers 1466 1522 IPR036236 -
Gso6g1468 1586 MobiDBLite consensus disorder prediction 1003 1038 - -
Gso6g1468 1586 ProSiteProfiles Zinc finger C2H2 type domain profile. 1553 1584 IPR013087 -
Gso6g1468 1586 MobiDBLite consensus disorder prediction 1065 1086 - -
Gso6g1468 1586 ProSitePatterns Zinc finger C2H2 type domain signature. 1555 1579 IPR013087 -
Gso6g1468 1586 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 6 1576 - -
Gso6g1468 1586 MobiDBLite consensus disorder prediction 1413 1445 - -
Gso6g1468 1586 MobiDBLite consensus disorder prediction 1097 1122 - -
Gso6g1468 1586 Gene3D Classic Zinc Finger 1550 1579 - -
Gso6g1468 1586 ProSiteProfiles Zinc finger C2H2 type domain profile. 1493 1522 IPR013087 -
Gso6g1468 1586 SMART JmjN_1 20 61 IPR003349 -
Gso6g1468 1586 SUPERFAMILY beta-beta-alpha zinc fingers 1541 1575 IPR036236 -
Gso6g1468 1586 MobiDBLite consensus disorder prediction 1416 1441 - -
Gso6g1468 1586 Coils Coil 1431 1451 - -
Gso6g1468 1586 MobiDBLite consensus disorder prediction 1312 1342 - -
Gso6g1468 1586 SUPERFAMILY Clavaminate synthase-like 176 367 - -
Gso6g1468 1586 SMART c2h2final6 1493 1517 IPR013087 -
Gso6g1468 1586 SMART c2h2final6 1553 1579 IPR013087 -
Gso6g1468 1586 SMART c2h2final6 1523 1547 IPR013087 -
Gso6g1468 1586 SMART c2h2final6 1470 1492 IPR013087 -
Gso6g1468 1586 ProSitePatterns Zinc finger C2H2 type domain signature. 1495 1517 IPR013087 -
Gso6g1468 1586 ProSiteProfiles Zinc finger C2H2 type domain profile. 1523 1552 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1468 Gso-Chr6 14753876 14764105 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1468 776 877 C2H2 Transcription Factor Family AT5G04240 33.333 4.68e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso6g1468 JmjC 2.1e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1468 - - gmx:100810437 3190.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1619 4 45879016 45888885 Gso6g1468 6 14753876 14764105 GST