Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1467 ATGGGAGTAGTTTCTGAAGGAAACGGCGACGTTTTACCATGGCTGAAATCGATGCCGGTGGCGCCGGAGTACCGGCCGAGCGCCGCGGAGTTTCAAGATCCTATAAGTTACATATTCAAGATCGAGAAGGAAGCTTCCAAGTACGGAATCTGCAAAATCATCCCTCCCTTCCCACCTTCTTCCAGGAAGACCGCAATCGCCAACCTCAACCGCTCACTCGTGGAGACCGGCTCCACATTCACCACGCGCCAGCAGCAGATCGGCTTCTGCCCCCGCAGGCCCAGGCCCGTCCAGAGGCCCGTCTGGCAGAGCGGTGATCGCTACACCTTCACCGAGTTCGAGTCCAAGGCCAAGTCCTTTGAGAAGACATACCTCAAACGCCACGCCAAGAAGGCCTCTGGCCTTGGCCCGGGCCCTCTGGAGACTGAAACGCTGTTCTGGAAGGCGACGCTGGACAAACCGTTCTCCGTGGAATACGCGAACGACATGCCGGGGTCAGCCTTTTCCCCGAAATGCAGGCGCGTAGGGGATCCAAGCTCACTGGCGGACACTCAGTGGAACATGAGAGCGGTTTCGAGGGCCAAAGGTTCGCTCTTACAGTTCATGAAAGAGGAGATTCCGGGCGTTACTTCTCCTATGGTCTACGTTGCCATGCTCTTCAGCTGGTTCGCGTGGCATGTTGAGGATCATGACTTGCACAGCCTCAATTACCTCCACATGGGCGCCGGCAAGACCTGGTACGGCGTCCCCCGTGACGCCGCCGTTGCTTTCGAGGAAGTCGTTAGGGTTCACGGCTACGGCGGAGAGATTAACCCGCTCGTTACTTTTGCTATTCTAGGTGAGAAAACCACAGTGATGTCGCCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTTGTGACTTTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCGGCGAACATTGCAACACCTGAGTGGTTGAGGTTTGCTAAAGATGCTGCTATTCGGAGGGCTTCACTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCGGGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGACAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGCTACAGAACAATGATCTGCTTCATTTTCTTGGGCAAGGATCTGCTGTAGTACTTCTTCCTCATAGCTCAGTTGACATTTCTGTCTGCTCAAAATTACGTGTTGGATCCCAGCAATCCATTAATTTAAGCAATTCTGAGGGAATGCATTCTTCAAAAGGTTTTGTTTCTGATGATCTGGCATTCAACAGAAGTCATGGAATCAAGCAAGGAAAAAGTTTCTATTTTGTGAAAGACAAGTTTACTACATTGTGTGAAAGGAACATGATTTCCTCTTTTGATGTAAATGGTAACATAAGCATTTCAAGTTTTAATCCGCTTCAAAGAGACACTGAAAGAGAAACTTGTCAAGGAGATGGGTTGTCAGATCAGAGACTGTTTTCATGTGTCACATGTGGAATATTATGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTATCTAACAATAAATTTACTATTGCCCGTGAAGAAGCAACTATTCCTGAGTCAAATATGTATACAGGATGGATGAAAAAGAATGTCCAAGATGGTATACATGATGTTCCTTTTCAATCTTCTCAGGTGGCTTTAAATACTGTAAGTGAAAATGGAAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCTGACTCTGAGGAAGATCAGATTGCGGTTGACAGTCATGAATCAAATGTGATAAACTCTGCTTCAGAAAGTTTACTTTCTGATACTCGAGATTCCCATGCTAGTCGGACTGCACTTGATAGGGGAGATTATATTCCTTCAAAGAGTTCCAGTTATGAGGATTTTATACATCGTAGATTAGAGTGTTTTGAAAATACAAGGACGGTGCCTAATTCCACCTCTAATTGTTCCCAAGATGCTTATGATGCTAAAAGGTCGTTGTCTAGCAAGTCTATGGTTCCCTTTGATTATAAAAAAGCTTTGATGGTGCTACAATCTGATGAAGACTCATCCAGAATGCATGTTTTTTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCTCAATTGGTGGAGCCGACATATTGCTCCTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAAATGGTGGCGGAAGATTTGGGGATTGATTACGTATTGAAGAATATTGTATACAGGCACGCTTCCACGGAGGATGAGGAGAGGATCCAGTCGGCTCTGGACAATGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTCTGCATTTGGTTGTAGCTCTCCAGCAAGCTCACTTGTAGAGCCAAAGGTCTACCAAAGAAGGGTCAACAAGCAGAAAAAGATTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAAAAAGAGATTCTGAAGATATTGAGGATGAGAAACTCTTACAAGGGTTGACATTACCTGATGAGAAAATCGAAAGATCAGAAAGTACCCTCAAAAGGGAAGCTATTAGCAGAAAATCAGGTAAGAAAAGGAAAAAGACAGCAGAGAATGGACGATTCAGGAAAGGAAGTTATGCTAAGAAAAATATACTTTCAGATGATTCCACTGAAGATAAACCCAACTCACAGCCAAGGAGGATTCTTCGAAGTAAGAAAGCCAGGCATGTTGAGAGAGACTGTGCTGCTTTGAAACGGGATTATTCTCCTCCATATCATCATAGAAAACCAACAAGCCACCAAACAAACTTCACTGAAAGTGATGCAGTTTCTGATGATTCACTTGATGATGATGATCACATGCGGCAAAGGAGGAATGTTAAAGTTGAAAAGGCTAAATTTATGGACAATGATGTGGTTTCAAATGATACGATGGACTATGACTCTGATTGCCTGCAGAGGGAAGAACATAGCAGCAAGCAAGTTGAAGATATGGAGAGAGATGCAAATTCAGAAGATTTTTTGGATGTTGGTTCTCTTCAGCTGCAACGGAAGATTTCCAGAGCCATGCATGTTAAAAGCATCAGAGAAGAAGATATAATTTCTGATGACCAAATGGAGAGTCCTTTTCAAAAGAGGCAAAAGAGAATTCCTAAAAGCAGGCAGGGAAAATACCTTACTGGAAAAGATATAATATCTGACGACCAACTAGAGCTGAAAATGCAGAAGCGGCAACAGACGAATCCTAAAAGCAGGCAAGCCAAATACCTCAACAAAGAGGATATTGCATCAGATGACCAATTGGAGGACCATTATCGTAGATATCAAAGGAATCCTAAAGGCAGACAGGCCACATGTGTAGCAGGGGAAGATGAAATGTCTGATGACCAATTGGAGAATCATTGTCAGAAGCAGCAAACAAATTTCTCTAGGAAAAGGCAAAACAAAGATGTTGTTAGAGAGGTTAAAAACGAAATGTGTGATGACCAATTGGAGGACCATTTTCTGAAGCAGCATAGAAGATTTCCTAAGAGCAGGCAAAATAAACACACTGAGAAAGAAATCATGGATGACTTAGCTGAGAATAATTCTCATCTGCTGCATAGAACTCCTAAAAGGAAGCAAGCTAAATGCATGGAAGAAGATGATATGAATTCAGATGATGAAATGGAAGATGATCAGCCGCTGAGGAGAGCACTTCGAAGTAAACAAGCTAAACCAAAGACACTTCTGAAACAAGCTAATTCCTTCCAAGCGAAAAAGCAGGCATCTCGGCCCATAAAACAGGGCTCTCGGTTGCTTGTGAAATCAAAGGCTCCTCAGCAAATAAAACAGCCTGCTCATTTGCGGAATAAGCAATCTAATAACACCCAGGAATTTAGTTTATATATGGAAGAGGAGGAAGATGGTGGACCTAGCACACGCCTTAGGAAGAGAGCCACAAAAGCTCAGGAATCTGAAGGAAAATTGAAAGACAAGCAAACAAAAAGGAAGAAGGTGAAGAATGCTGCGGCTGCAAAGGTTTCGGTTGGCCATGCCAAAATGAAGGATGGGGAAGCAGAATATCAGTGTGATATTGATGGGTGCACTATGAGTTTTGGGTCGAAACAGGAGCTGATGCATCATAAGAAAAACATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAGCATCGTCGAGTTCATGAGGATGAGCGCCCGTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACCGAGCACATTCGAGTCCACACTGGTGCAAGACCTTATGTATGTGCCGAGCCTGATTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAATTGTCAATAG 4698 0.4391 MGVVSEGNGDVLPWLKSMPVAPEYRPSAAEFQDPISYIFKIEKEASKYGICKIIPPFPPSSRKTAIANLNRSLVETGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDRYTFTEFESKAKSFEKTYLKRHAKKASGLGPGPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRRVGDPSSLADTQWNMRAVSRAKGSLLQFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPAGISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHFLGQGSAVVLLPHSSVDISVCSKLRVGSQQSINLSNSEGMHSSKGFVSDDLAFNRSHGIKQGKSFYFVKDKFTTLCERNMISSFDVNGNISISSFNPLQRDTERETCQGDGLSDQRLFSCVTCGILCFSCVAIVQPREPAARYLMSADCSFFNDWVVGSGVSNNKFTIAREEATIPESNMYTGWMKKNVQDGIHDVPFQSSQVALNTVSENGNTALALLASAYGNSSDSEEDQIAVDSHESNVINSASESLLSDTRDSHASRTALDRGDYIPSKSSSYEDFIHRRLECFENTRTVPNSTSNCSQDAYDAKRSLSSKSMVPFDYKKALMVLQSDEDSSRMHVFCLEHAAEAEQQLRSIGGADILLLCHPDYPKIEAEAKMVAEDLGIDYVLKNIVYRHASTEDEERIQSALDNEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYSAFGCSSPASSLVEPKVYQRRVNKQKKIVAGKWCGKVWMSNQVHPLLAKRDSEDIEDEKLLQGLTLPDEKIERSESTLKREAISRKSGKKRKKTAENGRFRKGSYAKKNILSDDSTEDKPNSQPRRILRSKKARHVERDCAALKRDYSPPYHHRKPTSHQTNFTESDAVSDDSLDDDDHMRQRRNVKVEKAKFMDNDVVSNDTMDYDSDCLQREEHSSKQVEDMERDANSEDFLDVGSLQLQRKISRAMHVKSIREEDIISDDQMESPFQKRQKRIPKSRQGKYLTGKDIISDDQLELKMQKRQQTNPKSRQAKYLNKEDIASDDQLEDHYRRYQRNPKGRQATCVAGEDEMSDDQLENHCQKQQTNFSRKRQNKDVVREVKNEMCDDQLEDHFLKQHRRFPKSRQNKHTEKEIMDDLAENNSHLLHRTPKRKQAKCMEEDDMNSDDEMEDDQPLRRALRSKQAKPKTLLKQANSFQAKKQASRPIKQGSRLLVKSKAPQQIKQPAHLRNKQSNNTQEFSLYMEEEEDGGPSTRLRKRATKAQESEGKLKDKQTKRKKVKNAAAAKVSVGHAKMKDGEAEYQCDIDGCTMSFGSKQELMHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKRKTGHSAKKNCQ* 1566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1467 1565 MobiDBLite consensus disorder prediction 1022 1036 - -
Gso6g1467 1565 ProSitePatterns Zinc finger C2H2 type domain signature. 1474 1496 IPR013087 -
Gso6g1467 1565 Gene3D Classic Zinc Finger 1470 1499 - -
Gso6g1467 1565 Gene3D Classic Zinc Finger 1500 1528 - -
Gso6g1467 1565 PANTHER LYSINE-SPECIFIC DEMETHYLASE 6 1092 - -
Gso6g1467 1565 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1184 1555 - -
Gso6g1467 1565 ProSiteProfiles JmjN domain profile. 21 62 IPR003349 -
Gso6g1467 1565 MobiDBLite consensus disorder prediction 1286 1308 - -
Gso6g1467 1565 SUPERFAMILY beta-beta-alpha zinc fingers 1488 1530 IPR036236 -
Gso6g1467 1565 ProSiteProfiles JmjC domain profile. 180 349 IPR003347 -
Gso6g1467 1565 SMART cupin_9 180 349 IPR003347 -
Gso6g1467 1565 MobiDBLite consensus disorder prediction 1371 1388 - -
Gso6g1467 1565 SUPERFAMILY Clavaminate synthase-like 176 367 - -
Gso6g1467 1565 Pfam jmjN domain 22 55 IPR003349 -
Gso6g1467 1565 ProSitePatterns Zinc finger C2H2 type domain signature. 1534 1558 IPR013087 -
Gso6g1467 1565 MobiDBLite consensus disorder prediction 940 1047 - -
Gso6g1467 1565 SUPERFAMILY beta-beta-alpha zinc fingers 1445 1501 IPR036236 -
Gso6g1467 1565 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 6 1092 - -
Gso6g1467 1565 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1184 1555 - -
Gso6g1467 1565 SUPERFAMILY beta-beta-alpha zinc fingers 1520 1554 IPR036236 -
Gso6g1467 1565 MobiDBLite consensus disorder prediction 663 684 - -
Gso6g1467 1565 SMART c2h2final6 1532 1558 IPR013087 -
Gso6g1467 1565 SMART c2h2final6 1449 1471 IPR013087 -
Gso6g1467 1565 SMART c2h2final6 1472 1496 IPR013087 -
Gso6g1467 1565 SMART c2h2final6 1502 1526 IPR013087 -
Gso6g1467 1565 MobiDBLite consensus disorder prediction 1395 1420 - -
Gso6g1467 1565 SMART JmjN_1 20 61 IPR003349 -
Gso6g1467 1565 MobiDBLite consensus disorder prediction 1001 1021 - -
Gso6g1467 1565 ProSiteProfiles Zinc finger C2H2 type domain profile. 1472 1501 IPR013087 -
Gso6g1467 1565 MobiDBLite consensus disorder prediction 1335 1352 - -
Gso6g1467 1565 ProSiteProfiles Zinc finger C2H2 type domain profile. 1532 1563 IPR013087 -
Gso6g1467 1565 MobiDBLite consensus disorder prediction 1286 1423 - -
Gso6g1467 1565 ProSitePatterns Zinc finger C2H2 type domain signature. 1504 1526 IPR013087 -
Gso6g1467 1565 Gene3D Classic Zinc Finger 1529 1558 - -
Gso6g1467 1565 ProSiteProfiles Zinc finger C2H2 type domain profile. 1502 1531 IPR013087 -
Gso6g1467 1565 MobiDBLite consensus disorder prediction 966 993 - -
Gso6g1467 1565 Pfam JmjC domain, hydroxylase 213 331 IPR003347 -
Gso6g1467 1565 Gene3D Cupin 14 353 - -
Gso6g1467 1565 Coils Coil 1410 1430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1467 Gso-Chr6 14739830 14749665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1467 1385 1562 C2H2 Transcription Factor Family AT3G48430 62.105 5.34e-70 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso6g1467 JmjC 1.2e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1467 - - gmx:100810972 3129.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1467 6 14739830 14749665 Gso6g1467 6 14739830 14749665 ECH