Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1466 ATGGAGCCCATTGAATCCGAATCAGTTAGTTCCTCCGCCAAAGACCAGCAACTGGGTGAACCTTCTTCCACTGTTCACCCCCTCGATCACGATCCTCAACCTTCAGATCTCAATCGCGTTACCCCTGTTGATGATGCACTTGGTGAGGAGTTTCAGAACAAGTTGGATTTGAAGGATGGGGGTGAGAGTGAGAATAATGGTTCGAACTTGGAAGATGGGGGTGAAAAATTGAGCGAGGATAAAGGTTCAAACTTGGAAGATGCGAGTGAAAAATTGGGTGATGAAGGTGCTGCTGCCCCAGAAGGTGGCAAGGGAGAAGGGTGTGATGGTGATGTTGGTGGTGTTGCTAATGATTATGGTGTTATCGGTGATGATGTAGTTGTTGCTGAGGATGGTGGTGTTGTTCGTGATGATTTAGTTGTTGTTGATGAGGATGATGATGACGGTGTTGCTGTTCGTGATGATTTAGTTGTTGTTGATGAGGATGATGATGATGATGGTGTTGTTCGTAATGATGTAGTAGTTGTTGTTGATGTTGATGGTTGGAATGGTAGTGATGAGGGGTGTGATTGGATTGAGAATGAGAATGTGAATGAGAGTGAGAGTGATAAGGTGGGAGTGGAATATAAAGATGAGAGGAGCAGCGGTAAAGCTCAACAGTACCCGTTGAGGCCAGAGGCTGAAGACTGTGCATTTTATCTCAAAACTGGGACTTGCAAATTTGGATTCAATTGCAAGTTCAATCACCCGCTTAGGAGGAAAAACCTGGCTAAAAACGAGAATGCGGGAGAAAGAGAAGAGCAGGAAGAAAGATCAGGCCAGACGGAATGCAAGTATTATTTAAGGTCTGGGGGGTGTAAGTTCGGAAAGGCTTGCAAGTTTAATCACACAAGAGGAAAGAGTTCATCAGCATCCTCTACTGCAGAGCTTAACTTCCTTGGCCTGCCTATTCGTGTGGGAGAGAAAGAGTGCCATTATTACATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAGGTTTAATCATCCTGATCCTACAGCTATTGGAGGAGGTGATTCTCCTTCCGGTTATGGTAATGGAAGTTCTATTTCGTTGCAAGGTGTATCACAATCATCTATATCCTCATGGTCTTCTACTAGACCATTAAATGAACCTGCTCCTTTTGTGCCGGTGATACTTTCACATAATCCAGGGGTTTCTCCCCAAAGTTCTGAATGGAATGGATACCAGGCACCAGTCTATCTATCTGAGAGGAGTCTGCATCCACCTTCAACATATGTCATGAACAACCCAGCTATAGAATCAAATGTTTATATGCACCATCAAAAACAAATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCCGAATGCAGCTATTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATTTCATCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTACCTTTGAGACCGGAGCAGACTGTTTGCACATATTACCGCCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTCGATCACCCACCACCCTCAACTATGGCTGGACTTGATCAACAATCCTCGTATACAAACTCAGCTGGTGTTGATGTGGCTGAAAATGGAGATGCCGATGATGGGAATCAGCAGTCTGTGTAA 1689 0.4417 MEPIESESVSSSAKDQQLGEPSSTVHPLDHDPQPSDLNRVTPVDDALGEEFQNKLDLKDGGESENNGSNLEDGGEKLSEDKGSNLEDASEKLGDEGAAAPEGGKGEGCDGDVGGVANDYGVIGDDVVVAEDGGVVRDDLVVVDEDDDDGVAVRDDLVVVDEDDDDDGVVRNDVVVVVDVDGWNGSDEGCDWIENENVNESESDKVGVEYKDERSSGKAQQYPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLRRKNLAKNENAGEREEQEERSGQTECKYYLRSGGCKFGKACKFNHTRGKSSSASSTAELNFLGLPIRVGEKECHYYMRTGSCKFGANCRFNHPDPTAIGGGDSPSGYGNGSSISLQGVSQSSISSWSSTRPLNEPAPFVPVILSHNPGVSPQSSEWNGYQAPVYLSERSLHPPSTYVMNNPAIESNVYMHHQKQMQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPEQTVCTYYRRYGICKFGPACKFDHPPPSTMAGLDQQSSYTNSAGVDVAENGDADDGNQQSV* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1466 562 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 10 561 - -
Gso6g1466 562 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Gso6g1466 562 ProSiteProfiles Zinc finger C3H1-type profile. 500 528 IPR000571 GO:0046872
Gso6g1466 562 MobiDBLite consensus disorder prediction 1 111 - -
Gso6g1466 562 Gene3D - 193 259 - -
Gso6g1466 562 Gene3D - 410 489 - -
Gso6g1466 562 ProSiteProfiles Zinc finger C3H1-type profile. 318 346 IPR000571 GO:0046872
Gso6g1466 562 MobiDBLite consensus disorder prediction 532 562 - -
Gso6g1466 562 SUPERFAMILY CCCH zinc finger 223 252 IPR036855 GO:0046872
Gso6g1466 562 SUPERFAMILY CCCH zinc finger 459 483 IPR036855 GO:0046872
Gso6g1466 562 MobiDBLite consensus disorder prediction 1 23 - -
Gso6g1466 562 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 503 527 IPR000571 GO:0046872
Gso6g1466 562 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 296 IPR000571 GO:0046872
Gso6g1466 562 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 456 481 IPR000571 GO:0046872
Gso6g1466 562 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 344 IPR000571 GO:0046872
Gso6g1466 562 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 250 IPR000571 GO:0046872
Gso6g1466 562 SUPERFAMILY CCCH zinc finger 500 528 IPR036855 GO:0046872
Gso6g1466 562 Gene3D - 499 545 - -
Gso6g1466 562 PANTHER PROTEIN PHOSPHATASE RELATED 10 561 - -
Gso6g1466 562 ProSiteProfiles Zinc finger C3H1-type profile. 271 299 IPR000571 GO:0046872
Gso6g1466 562 SUPERFAMILY CCCH zinc finger 275 299 IPR036855 GO:0046872
Gso6g1466 562 SMART c3hfinal6 500 527 IPR000571 GO:0046872
Gso6g1466 562 SMART c3hfinal6 224 251 IPR000571 GO:0046872
Gso6g1466 562 SMART c3hfinal6 454 481 IPR000571 GO:0046872
Gso6g1466 562 SMART c3hfinal6 320 345 IPR000571 GO:0046872
Gso6g1466 562 SMART c3hfinal6 271 298 IPR000571 GO:0046872
Gso6g1466 562 Gene3D - 260 348 - -
Gso6g1466 562 MobiDBLite consensus disorder prediction 73 94 - -
Gso6g1466 562 MobiDBLite consensus disorder prediction 532 546 - -
Gso6g1466 562 ProSiteProfiles Zinc finger C3H1-type profile. 454 482 IPR000571 GO:0046872
Gso6g1466 562 SUPERFAMILY CCCH zinc finger 319 345 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1466 Gso-Chr6 14714910 14721237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1466 450 562 C2H2 Transcription Factor Family AT3G02830 43.103 3.97e-22 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso6g1466 zf-CCCH 1.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1466 - - gmx:100809906 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1620 4 45899783 45905506 Gso6g1466 6 14714910 14721237 GST
Gso5g0372 5 3911597 3916167 Gso6g1466 6 14714910 14721237 PCT
Gso17g1068 17 10143573 10148248 Gso6g1466 6 14714910 14721237 PCT
Gso6g1466 6 14714910 14721237 Gso5g0372 5 3911597 3916167 PCT
Gso6g1466 6 14714910 14721237 Gso17g1068 17 10143573 10148248 PCT