Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1460 ATGGCGGCGGTAGCGGTGGCAGAGGTGGCAGAGGTTGGGAAGGCCCCACGGCCGGGCAAGGGCGGTTACGAAGCGCACGGCCTGAGCGAGGAGGAGGCTCGTGTACGCGCCATCGCGGAGATCGTGAGTTCCATGGTGGACCTCTCCCACAAAGGCCAGAACGTGGACCTGAACGCGCTCAAGTCCGCGGCGTGCCGCAAGTACCGGCTCTCACGCGCGCCGAAGCTCGTGGAGATGATCGCGGCGCTCCCCGACGCCGAGCGCGAGACGCTCCTCCCCAAGCTCCGCGCCAAGCCCGTCCGCACCGCCTCCGGAATCGCCGTCGTCGCCGTCATGTCGAAGCCGCACCGGTGCCCACACATCGCCACCACCGGGAACATCTGCGTCTACTGCCCCGGGGGACCTGACTCCGACTTCGAGTACAGTACCCAGTCTTACACCGGTTATGAACCAACCAGCATGCGTGCAATTCGTGCGAGGTATAATCCATATGTCCAAGCGAGGAGCAGGATAGATCAGCTTAAGCGTTTGGGTCATAGTGTAGACAAGGTTGAATTTATCTTAATGGGCGGTACCTTCATGTCACTTCTGGCTGATTACCGTGATTACTTTATAAGAAATCTTCATGATGCTTTGTCTGGACACACATCTGCCAATGTGGAAGAGGCAGTGGCTTACTCTGAGCATGGGGCAACCAAGTGTATTGGCATGACAATTGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGCCAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAAGATGTTGCTCGAGACACAAATAGAGGACACACTGTTGCTGCTGTAGCTGATTGTTTTTGCCTGGCTAAAGATGCTGGTTTCAAGGTTGTTGCTCATATGATGCCTGATCTTCCAAATGTTGGTGTTGAGAGGGACATGGAAAGTTTCCGGGAGTTTTTTGAGAGTCCCTTGTTTAGAGCAGATGGGCTTAAAATATATCCTACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGGTATAGAAACTATCCACCAGAGCAACTTGTGGACATTATAGCAAGGATCCTTGCAATGGTACCCCCATGGACACGTGTTTATAGAGTTCAGCGGGATATTCCCATGCCTCTGGTTACCTCTGGGGTTGAGAAAGGAAATCTGAGGGAGCTGGCATTAGCTCGAATGGAAGACCTGGGATTGAAATGTCGTGATGTTCGGACCAGAGAAGCTGGAATCCAGGATATTCACCACCAAATTAAGCCAGAAGAGGTGGAGCTTGTTCGGCGTGATTATATGGCAAATCAGGGTTGGGAAACATTTCTATCATATGAAGATACACGGCAGGATATCCTTGTTGGTTTGTTGCGGCTGCGAAAATGTGGCCGCAACACAACTTGTCCGGAGCTTATGGGGAAGTGTTCTATTGTTCGTGAACTCCATGTTTATGGAACTGCTGTACCAGTTCATGGACGGGATGCTGACAAGCTACAACACCAGGGTTATGGCACACTTTTAATGGAGGAGGCAGAGCGCATTGCTTGCAGAGAACACAGATCAACAAAAATAGCTGTAATTTCAGGGGTTGGCACACGCCATTATTACAGGAAACTGGGATATGAGCTTGAAGGACCTTACATGGTGAAATATCTAGTGAAATAA 1704 0.51 MAAVAVAEVAEVGKAPRPGKGGYEAHGLSEEEARVRAIAEIVSSMVDLSHKGQNVDLNALKSAACRKYRLSRAPKLVEMIAALPDAERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLLADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANQGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIACREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLVK* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1460 567 Pfam Acetyltransferase (GNAT) family 418 554 IPR000182 GO:0016407
Gso6g1460 567 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 5 565 IPR039661 -
Gso6g1460 567 ProSiteProfiles Radical SAM core domain profile. 101 391 IPR007197 GO:0003824|GO:0051536
Gso6g1460 567 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 374 561 IPR016181 -
Gso6g1460 567 Pfam Radical_SAM C-terminal domain 332 411 IPR032432 -
Gso6g1460 567 SMART MiaB 108 370 IPR006638 GO:0003824|GO:0051536
Gso6g1460 567 Pfam Radical SAM superfamily 126 314 IPR007197 GO:0003824|GO:0051536
Gso6g1460 567 PIRSF HAT_Elp3 23 566 IPR034687 -
Gso6g1460 567 TIGRFAM ELP3: radical SAM enzyme/protein acetyltransferase, ELP3 family 53 565 IPR034687 -
Gso6g1460 567 PANTHER ELONGATOR COMPLEX PROTEIN 3 5 565 IPR034687 -
Gso6g1460 567 SFLD ELP3-like 56 565 IPR034687 -
Gso6g1460 567 SUPERFAMILY Radical SAM enzymes 138 377 - -
Gso6g1460 567 Gene3D - 417 566 - -
Gso6g1460 567 SFLD Radical SAM 56 565 IPR007197 GO:0003824|GO:0051536
Gso6g1460 567 CDD Radical_SAM 115 362 - -
Gso6g1460 567 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 415 567 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1460 Gso-Chr6 14590622 14595821 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Gso6g1460 Radical_SAM 6.4e-17 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1460 K07739 - gmx:100784961 1124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1460 6 14590622 14595821 Gso6g1460 6 14590622 14595821 ECH
Gso4g1627 4 46039117 46044274 Gso6g1460 6 14590622 14595821 GST