Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1449 ATGGGGTTTCATGACTTGGTTTTGCTATTCTGTTCAGCTTGGTGTGTGTTTTATGTGGGTAGTTGCAGTGCTCAGTTGCAATCCTCTCAGACTCAAGTTCTTCTCCAACTGAAAAAGCACTTGGAGTACCCAAAACAGTTGGAAATATGGAGAGATCGTTGGACAGATCTTTGCTCTATTTCTTCTCCTGGGCAAGTGAATGTCACATGCAAGGACAATTTTGTCACTGAGCTCACAATCTTGGGTGATGATAAGCCAACAACAAAGGGTAGAGATTTTGATGGGTTTGCCATTCCAAATCAAACACTATCAGAGAGCTTCTCCATGGACTCTCTTGTGGCCACTCTGGCAAGGTTAACCAGCCTGAGAGTCCTTAACCTTGTCTCTTTGGGCATGTGGGGACCACTCCCTGATAGAATTCACAGACTCTATGCACTTGAACATTTGGACTTGAGTTCCAATTATCTTTATGGATCAATCCCTCCAAAGATTTGCACAATGGAGAACCTTCAAACTCTTAGATTGGTTGATAACTTCTTCAATGGTACCATCCCAAGCTTGTTCAATTCATCAAGCCACCTCACAGTTCTTAGTTTGAAGAGTAACAGGTTGAAGGGTCCATTTCCACCTTCAATCCTTAGTGTCACCACTTTAACTGAAATTGACATGTCAAGCAATCAAATATCAGGTAGCTTGGAAGATTTGAGTGTCTTGAGTAGCTTGGAGGAACTAGATTTAAGGGAAAACAGGTTAGAGTCTAAACTACCTGCAATGCCAAAAGGGTTGATAAGTCTTTACCTCAGCAGAAACTCCTTCTCAGGTGAAATTCCCAAGCACTATGGTCAACTCAATAGGCTTGAGAAGCTTGATGTTTCCTTCAATTCACTCACAGGCACTGCTCCTTCTGAACTTTTTTCTTTGCCAAATATTAGTTACTTGAATTTGGCATCCAACATGTTGAATGGACCACTCCAAAACCACCTAAGATGTAGCAGCCAACTTAGATTTGTTGACATATCATACAATAGATTTGTGGGGGGCTTGCCTTCTTCACTGAACACTACTAAATCAGAAAAAATAGTTGTTAAGAGTGATGGAAACTGTTTATCTGGGAGTGTGCAGCATCAGCATGCAGTATCCTACTGCACAGAAGCTCATGTGAAGAAGAAATCATACAGAGTTGGAATTTTTGTTGGTCTCATTGTGGGAATTCTTTTCATCATTGTGGTTTTGGCTTTGGCCATAATTATAACTTGTAAAAGGTATTTCCCTTGGGGGGTGTCAGAGCAGCACCTATTGCATAAAACAGTTCAAGATAGCAGCTATGCAGCAGGGCTCTCCTCTGAGCTTGTCACAAATGCAAGGTATGTTTCTGAAGCTGAAAAGTTAGGCAGAGAGGACCTCCCCACATGTAGGTCATATTCCTTGGAAGAGCTAAAGGAAGCCACAAATAACTTTGACAACTCTACTTTTATGGGTGAAAATATATATGGGAAGCTTTACAGAGGAAAATTGGAGAGTGGAATACAGGTTGTAATAAGGTCCCTGCCTTTGTCAAAAAAGTATTCAATCAGGAATTTCAAACTGAGGTTGGATTTGCTTGCAAAGCTTCGTCACCCTCATTTGGTATCCCTCCTGGGGCACTGCATTGATGGTGTTGTAGGAGAGAATAATGAGGCAAATGTCTTTCTCATTTATGAATATGTGTCAAATGGGACTTTCCAGACTTATCTCTCTGGAGATAGTCCAGGCAAGGTTTTCAATTGGTCAGAGCGATTGTCTGTACTAATTAATGTTGCTAAGGCTGTTCACTTCCTACACACTGGCATGATACCTGGTTTCTTCAAAAATCGACTTAAGACCAACAATATCTTGCTGAATGAGAATTGGATGGCAAAGTTGAGTGACTATGGATTATCCATTATATCAGAAGAGACTGATGCATGTGGGGTAAAAGGAGAAAGTTCTGATTCATGGCAAATGAAAATGTTAGAGGATGATGTTTATAGCTTTGGATTCATACTACTCGAGGCACTTGTTGGACCTTCATTATCAGCTAAAAGAGAAGCAAATGTGCTGAATGTAATGGCATCTTTCAATAGTCAAGATGGTTGGAAACAGGTTGTGGACCCAGTTTTGCAAGCTACATGTTCTAAAGAGTCTCTATTAGTTGTGATTTCCATAACAAACAAATGTATATCTTCTGAGTCATGGAGCCGACCATCCATTGAAGATGTCCTTTGGAACCTTCAATATGCATCTCAAATTCAGGGAACAGCTGATGGGGGATAA 2292 0.4079 MGFHDLVLLFCSAWCVFYVGSCSAQLQSSQTQVLLQLKKHLEYPKQLEIWRDRWTDLCSISSPGQVNVTCKDNFVTELTILGDDKPTTKGRDFDGFAIPNQTLSESFSMDSLVATLARLTSLRVLNLVSLGMWGPLPDRIHRLYALEHLDLSSNYLYGSIPPKICTMENLQTLRLVDNFFNGTIPSLFNSSSHLTVLSLKSNRLKGPFPPSILSVTTLTEIDMSSNQISGSLEDLSVLSSLEELDLRENRLESKLPAMPKGLISLYLSRNSFSGEIPKHYGQLNRLEKLDVSFNSLTGTAPSELFSLPNISYLNLASNMLNGPLQNHLRCSSQLRFVDISYNRFVGGLPSSLNTTKSEKIVVKSDGNCLSGSVQHQHAVSYCTEAHVKKKSYRVGIFVGLIVGILFIIVVLALAIIITCKRYFPWGVSEQHLLHKTVQDSSYAAGLSSELVTNARYVSEAEKLGREDLPTCRSYSLEELKEATNNFDNSTFMGENIYGKLYRGKLESGIQVVIRSLPLSKKYSIRNFKLRLDLLAKLRHPHLVSLLGHCIDGVVGENNEANVFLIYEYVSNGTFQTYLSGDSPGKVFNWSERLSVLINVAKAVHFLHTGMIPGFFKNRLKTNNILLNENWMAKLSDYGLSIISEETDACGVKGESSDSWQMKMLEDDVYSFGFILLEALVGPSLSAKREANVLNVMASFNSQDGWKQVVDPVLQATCSKESLLVVISITNKCISSESWSRPSIEDVLWNLQYASQIQGTADGG* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1449 763 Gene3D Ribonuclease Inhibitor 262 390 IPR032675 -
Gso6g1449 763 Gene3D Phosphorylase Kinase; domain 1 448 568 - -
Gso6g1449 763 SMART LRR_typ_2 283 307 IPR003591 -
Gso6g1449 763 SMART LRR_typ_2 238 261 IPR003591 -
Gso6g1449 763 SMART LRR_typ_2 143 167 IPR003591 -
Gso6g1449 763 PANTHER BNAA09G06560D PROTEIN 4 762 - -
Gso6g1449 763 Pfam Protein tyrosine and serine/threonine kinase 492 747 IPR001245 GO:0004672|GO:0006468
Gso6g1449 763 SUPERFAMILY Protein kinase-like (PK-like) 469 751 IPR011009 -
Gso6g1449 763 Pfam Leucine rich repeat 169 228 IPR001611 GO:0005515
Gso6g1449 763 Pfam Leucine rich repeat 285 344 IPR001611 GO:0005515
Gso6g1449 763 Gene3D Ribonuclease Inhibitor 27 261 IPR032675 -
Gso6g1449 763 SUPERFAMILY L domain-like 30 362 - -
Gso6g1449 763 ProSiteProfiles Leucine-rich repeat profile. 217 239 IPR001611 GO:0005515
Gso6g1449 763 ProSiteProfiles Protein kinase domain profile. 486 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1449 763 PANTHER OS07G0166700 PROTEIN 4 762 IPR045272 GO:0004714|GO:0006468
Gso6g1449 763 Gene3D Transferase(Phosphotransferase) domain 1 569 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1449 Gso-Chr6 14431533 14437259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1449 6 698 Miscellaneous Gene Families AT5G14210 50.000 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Gso6g1449 PK_Tyr_Ser-Thr 3.8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1449 - - gmx:100802978 1447.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1449 6 14431533 14437259 Gso6g1449 6 14431533 14437259 ECH
Gso4g1641 4 46199081 46204552 Gso6g1449 6 14431533 14437259 GST