Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1447 ATGTCCGCTCTCACATCTCTCTCACTCTCTCTTCGCACACTCTCCCTCCGTCCCAAACCAACCACACTTTCCGCTTCACTCTCTGCAATCCCAGGAAGTAGCGATGGATCTAAAACCAAGGTACCTCCCCGCAAAAGAAGAACGGGCAGAATAGAAGGCCCTAGAAAAAGCATGGAAGATTCCGTTCAACGAAAGATGGAGCAGTTTTACGAAGGCTCCGATGGGCCTCCGCTTCGCATTCTCCCCATTGGCGGTTTGGGAGAAATTGGGATGAATTGCATGCTCGTCGGGAACAATGACCGCTATATCCTTATTGATGCCGGTGTCATGTTTCCAGATTATGACGAGCTTGGAGTTCAAAAGATTATACCTGATACCACATTTATAAGAAAGTGGAGCCACAAGATTGAAGCACTTATCATAACGCATGGTCATGAAGATCATATCGGTGCGTTGCCTTGGGTCATTCCGGCATTGGATTCCAATACACCAATTTTTGCATCTTCCTTTACAATGGAGCTTATAAAAAAACGTTTGAAGGAACATGGTATTTTTGTTCCATCTAGACTCAAAGTATTTAGAACAAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAACCCATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGACTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCACTTGATGGGAAAGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGTAGGACAATTAGTGAATCTGTTGTGGCAGATGCATTGTTGAGACATATTTCAGCATCTAAAGGAAGGGTTATTACGACCCAGTTTGCGTCAAATCTACATCGGCTTGGTAGCGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACTTATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGTTCTCAAGCAGAACCACGTGCTGCCTTGAACCTCGCATCTTATGGAAGTAGTCATGCTTTCAAACTAGCCAAGGAAGATGTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTAATGAAAATGCTAAACCGCATATCGGAGATTGGATCAACAATTGTTATGGGAAAAAATGAAGGTTTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAAGAAATACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATCCATGGAGAACTTTTGTTCCTGAAGGAACATGAATTACTTGGAAAATCAACTGGGATTCGGCACACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGTGATAGAGCATTTGGTACATCTAGTGATCTCTTCATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATTGTCATTAGCATGGAAATATTTCGCCCTAAAATTTTAGATGGTTCAGCTGAAAACACCTTGAAAGGGAAGATAAGGATTACCACGAGATGCTTATGGCTTGACAAAGGGAAGCTGATGGATGCACTCTACAAAGCAGCCCGTGCAGCTCTTTCAAGCTGCCCTGTAAAGAGTCCACTGGCTCACATCGAAAGAATTGTGTCTGAGGTATTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCTGAAGTTATTGCCATTGCCATAGAAAAACCTGCGGCCATTCTTGCTGATGAGATAAACACAAAATTGTCTGGCAAATCCCATGTGGGTCTTGGAATGTCAACATTAAGTAAAGCAGTGGATGGACATGGGAAGGGAAATCAGTCCACTGGACTGCAGGTTAAAGATGATAGTATTGATAATGCAAGTGGAGCTGAGGGTGATTTATCTGAGGAAGACAACACTGCAAGTGGGCCTGAGGGTTATTTATCTGAGGAAGACAACACTGCAAGTGGAGCCGAGGGTGATTTATCTGAGTCAGAGGATTCAGATGAATTTTGGAAACCATTCATTACATCATTACCAGTTGAGAAGTCAATCAGTGCTGACAATGGTTATGTTTCACCAAAGGAGCAAAAATCCAATTTGAAGAAAGATGATTCTGAAGACATTGATGAAGCCAAGTCAGAAGAAACATCTAATTCTGAAGCCAAGTCTTCAAAATCAGTTAAGAGAAATAAATGGAAAACTGAGGAAGTTAAGAAGCTAATTGGTATGCGTGAGGAACTAAGTGAAAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAGATTTCTCAAAAATTGTTGGCTGATGGGATCTGCAGAAGTCCTGGACAGTGCAAATCTCTGTGGACATCTTTGGTAGTCAAATATGAGGGGATCAAGAATGAGGATAGGAAGAAAAGTTGGCCATACATAGAGGACATGGAAAGGATAATGTCTGATAAAGAAGCCCCTGCAAAATGA 2655 0.4196 MSALTSLSLSLRTLSLRPKPTTLSASLSAIPGSSDGSKTKVPPRKRRTGRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRILPIGGLGEIGMNCMLVGNNDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALIITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIKKRLKEHGIFVPSRLKVFRTRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISASKGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLAKEDVVLYSAKVIPGNESRVMKMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEILRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDRAFGTSSDLFIDERLRIALDGIIVISMEIFRPKILDGSAENTLKGKIRITTRCLWLDKGKLMDALYKAARAALSSCPVKSPLAHIERIVSEVLRKMVRKYSGKRPEVIAIAIEKPAAILADEINTKLSGKSHVGLGMSTLSKAVDGHGKGNQSTGLQVKDDSIDNASGAEGDLSEEDNTASGPEGYLSEEDNTASGAEGDLSESEDSDEFWKPFITSLPVEKSISADNGYVSPKEQKSNLKKDDSEDIDEAKSEETSNSEAKSSKSVKRNKWKTEEVKKLIGMREELSERFQVVKGRMALWEEISQKLLADGICRSPGQCKSLWTSLVVKYEGIKNEDRKKSWPYIEDMERIMSDKEAPAK* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1447 884 Gene3D - 279 429 IPR042173 -
Gso6g1447 884 Coils Coil 757 777 - -
Gso6g1447 884 ProSiteProfiles Myb-like domain profile. 787 851 IPR001005 -
Gso6g1447 884 PANTHER RIBONUCLEASE J 1 881 - -
Gso6g1447 884 CDD RNaseJ_MBL-fold 81 492 - -
Gso6g1447 884 SMART Lactamase_B_5a 90 287 IPR001279 -
Gso6g1447 884 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 472 IPR011108 -
Gso6g1447 884 CDD GT1 793 858 - -
Gso6g1447 884 MobiDBLite consensus disorder prediction 39 60 - -
Gso6g1447 884 Gene3D - 82 494 IPR036866 -
Gso6g1447 884 MobiDBLite consensus disorder prediction 668 684 - -
Gso6g1447 884 MobiDBLite consensus disorder prediction 749 793 - -
Gso6g1447 884 MobiDBLite consensus disorder prediction 759 793 - -
Gso6g1447 884 Pfam Myb/SANT-like DNA-binding domain 792 875 IPR044822 -
Gso6g1447 884 Pfam Metallo-beta-lactamase superfamily 91 235 IPR001279 -
Gso6g1447 884 Gene3D - 795 855 - -
Gso6g1447 884 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 881 - -
Gso6g1447 884 MobiDBLite consensus disorder prediction 23 60 - -
Gso6g1447 884 MobiDBLite consensus disorder prediction 666 731 - -
Gso6g1447 884 SUPERFAMILY Metallo-hydrolase/oxidoreductase 78 492 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1447 Gso-Chr6 14410588 14419861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1447 794 879 Trihelix Transcription Factor Family AT2G38250 37.079 6.98e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso6g1447 Lactamase_B 6.1e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1447 - - gmx:100779771 1707.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1447 6 14410588 14419861 Gso6g1447 6 14410588 14419861 ECH
Gso4g1643 4 46229776 46240153 Gso6g1447 6 14410588 14419861 GST
Gso17g1084 17 10296366 10305450 Gso6g1447 6 14410588 14419861 PCT
Gso6g1447 6 14410588 14419861 Gso17g1084 17 10296366 10305450 PCT