Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1444 ATGGTTTCAACGAGACGCAACAGTGGATCTTTCTCCAACAGTAACAAAAGGCCTTCTTCTTCTTCTTCTTCTTCCGAAGACAAGACTCCTTCTCCTCCCCCTAAGCGCCAAAAGGTCGACAATGGTGCTGCCACGTCGGAGAAACCGATGCCGGCGGCGGAAAATTCCAAGGAATTGAGCACGCTGGAGCCTCCCGCTGACCCCGGAGAATGCGCCGTTCAGGACGCGCAGATCGCCGGCGCAGCAAGTTCCGACGGCAAGGCCGAAGCTACTCCGCCGATCGCCGATGGTTCTACACCGACTGTGGTGGCTGATAAACCTAGGGGTTCGTTCTCTTCTTGGAGGGTACATCCGAAGCAAAACCCAAATTTTGAACCTTCAGTTCCATGGTGCAGACTCTTGTCTCAGTCCGCGCAGAATCCGAATGTTTTAATTTCCACACCCAGCTTTACTATTGGCTCAAGTAGGAGTTGCAATTTTTCGTTGAAGGATCAGACTATAAGTGCAAATTTGTGCAAGATCAAGCACACGCAGCGCGAGGGAAATGTCGTGGCTGTGCTAGAAAGTATGGGCAGCAAAGGATCGGTCGTAGTGAATGGGACTCTCGTCAAGAGGAGTGCCAGCTGCGTGCTTAACTCGGGGGATGAGGTGGTTTTTGGTTTGCTGGGGAATCATTCTTATATTTTTCAGCAAATAAATCCCGAAGTTACAGTTAAGGCTGCAGAAATTCAGGGTGGTGCTGGCAAGTTTTTTCAGTTTGAGAGAAGGGCCGGAGACCCTTCAGCTGTGGCCGGAGCTTCTATTTTGGCTTCTCTTTCTAGCCTCAGACCAGAGCTTACAAGATGGAAATCTCCATCTCAGACTGCCCATAAACCTCAGCAGGGTACTGATGTTTCTAGTCATTCTGTTTTCCCCGATGGTACAGAAACTGAGCTTGATGGCCTGGAAGGCAACTCAGCTCCAAATGTAGCGACTGATAAAGCTTTTGATGTTGGAGCAAGCGACAAGAATTCACCTATGGATTGTGTTCCAGATGATGCAGGCGCAGAGGCAGGCAATGTAAAAATCTCTGGGGTGAATGCTTTCCTAGGGCCTTTCTTCAGGGTTCTAGCTGGATCTACTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTATTTGAAGAAAGAAATGGGACGAGGGATGCGCAAGCTGCATCGACTTCGAGTGCTTCTGTACGCTGTGCTGTTTTTAAAGAAGATGTCCATGCTGCAATACTGGATGGGAAAGAAATAGAAGTGTCCTTTGACAACTTCCCATACTACTTGAGTGAGAATACAAAAACTGTCCTAATTGCAGCTTGCATTATACACCTGAAGCATAAAGAACATGCGAAGTACACCACAGATCTTACAACCATAAACCCTCGTATTTTACTCTCAGGACCTGCAGGGTCGGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAATACTTTGGAGCTAAATTGCTCATATTTGATAGCCATTCACTTTTGGGTGGTTTATCCTCCAAGGAAGCAGAGCTGCTCAAAGATGGATTTAATGCTGAGAAATTCTGCGCCTACGCTAAAAGTCCTTCATCCTCAGACATGGCCAGATGCATGGATCCATCAGCTAGTGAACCAGATACACCAAACTCCTCAAATGCACCCACTCCATATGGCTTTGAGTCTCAACCCAAGTTAGAAGCTGATAATGTACCATCTACCTCTGGGACAGCTAAAAATTGTGTGTTTAAACTAGGTGACAGGGTAAAATATAGTTCATCTTCTGGGGGCTTGTATCAGCTTCAGACAATTTCTTCAAAGTACAAGGGTCCAGCTAATGGAAGTCGGGGGAAGGTTGTCTTACTTTTTGATGATAATCCCTTGTCAAAGATTGGCGTAAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGAGGTTTGTGTGAGGGTGGTCAAGGATTTTTCTGCAATGTCACCGATCTTCGATTGGAAAACAGTGGCATTGAAGAACTTGACAGATTACTTATTAATACATTGTTTGAGGTTGTGGTTAGTGAGAGCAGAAATGCACCTTTCATTTTGTTCATGAAAGATGCAGAGAAGTCTATAGTAGGAAATGGAGATCCATTTTCATTTAAAAGTAGGCTTGAAAATCTTCCGGACAATGTGGTGGTAATAGGTTCACACACTCACACTGACAGTCGAAAGGAGAAGTCACATCCTGGAGGTTTGCTTTTTACAAAGTTCGGCAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCCGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAACAAAACCTTAACTAAGCTTTTCCCAAATAAAGTGACTATTCACATGCCACAGGATGAGGCACTTCTAGCATCTTGGAAGCAGCAACTCGATCGAGATGTTGAGACTCTTAAAATTAAAGAAAATTTGCACAATTTACGCACAGTTTTGAGCCGTTGTGGGGTGGAATGTGAAGGACTTGAGACCTTGTGCATTAGGAATCAGACACTTAGTATTGAAAATGCAGAGAAGATAGTTGGTTGGGCTTTAAGCTGCCATCTCATGCAGAATGCTGAAACTGACCCTGATGCAAAACTCGTGTTGTCTTGTAAGAGCATCCAGTATGGGGTTGGGATCTTACATGCTACCCAGAATGAGTCAAAAAGCCTGAAGAAGTCTCTTAAGGATGTTGTAACAGAAAACGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAACGACATTGGTGTTACTTTCGATGATATTGGAGCTCTTGAAAATGTCAAGGATACATTGAAGGAATTGGTTATGCTTCCTTTACAAAGGCCAGAGCTATTTTGCAAAGGGCAATTAACCAAGCCGTGCAAGGGTATCCTATTATTTGGTCCCCCTGGAACAGGTAAGACAATGCTTGCAAAGGCAGTTGCTACCGAAGCTGGTGCAAATTTCATCAACATTTCCATGTCAAGTATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATACGTGAAAGCTGTTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACAAAGGATACCGAGCGAGTTCTTGTACTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTGAAAGTTATACTTGAAAAAGAGGACTTGTCTTCTGATATTGATATGGATGCAATTGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAGAATTTGTGTGTAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAGGAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGAAGTGGAGATATCCGATCTTTAAACATGGAAGATTTCAAATATGCTCATCAACAGGTATGTGCAAGTGTTTCATCTGAATCCATAAATATGACCGAGCTTCAACAATGGAACGAACTATACGGTGAAGGTGGTTCAAGAGTAAAAAAAGCACTAAGCTATTTTATGTGA 3726 0.4388 MVSTRRNSGSFSNSNKRPSSSSSSSEDKTPSPPPKRQKVDNGAATSEKPMPAAENSKELSTLEPPADPGECAVQDAQIAGAASSDGKAEATPPIADGSTPTVVADKPRGSFSSWRVHPKQNPNFEPSVPWCRLLSQSAQNPNVLISTPSFTIGSSRSCNFSLKDQTISANLCKIKHTQREGNVVAVLESMGSKGSVVVNGTLVKRSASCVLNSGDEVVFGLLGNHSYIFQQINPEVTVKAAEIQGGAGKFFQFERRAGDPSAVAGASILASLSSLRPELTRWKSPSQTAHKPQQGTDVSSHSVFPDGTETELDGLEGNSAPNVATDKAFDVGASDKNSPMDCVPDDAGAEAGNVKISGVNAFLGPFFRVLAGSTCKLKLSKSICKQVFEERNGTRDAQAASTSSASVRCAVFKEDVHAAILDGKEIEVSFDNFPYYLSENTKTVLIAACIIHLKHKEHAKYTTDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHSLLGGLSSKEAELLKDGFNAEKFCAYAKSPSSSDMARCMDPSASEPDTPNSSNAPTPYGFESQPKLEADNVPSTSGTAKNCVFKLGDRVKYSSSSGGLYQLQTISSKYKGPANGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGLCEGGQGFFCNVTDLRLENSGIEELDRLLINTLFEVVVSESRNAPFILFMKDAEKSIVGNGDPFSFKSRLENLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEAPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKIKENLHNLRTVLSRCGVECEGLETLCIRNQTLSIENAEKIVGWALSCHLMQNAETDPDAKLVLSCKSIQYGVGILHATQNESKSLKKSLKDVVTENEFEKRLLADVIPPNDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILEKEDLSSDIDMDAIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKEQAAAVSEGRPAPALSGSGDIRSLNMEDFKYAHQQVCASVSSESINMTELQQWNELYGEGGSRVKKALSYFM* 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1444 1241 MobiDBLite consensus disorder prediction 536 580 - -
Gso6g1444 1241 MobiDBLite consensus disorder prediction 549 564 - -
Gso6g1444 1241 MobiDBLite consensus disorder prediction 281 319 - -
Gso6g1444 1241 MobiDBLite consensus disorder prediction 1 30 - -
Gso6g1444 1241 MobiDBLite consensus disorder prediction 281 306 - -
Gso6g1444 1241 Gene3D - 1109 1203 - -
Gso6g1444 1241 ProSitePatterns AAA-protein family signature. 1080 1099 IPR003960 GO:0005524|GO:0016887
Gso6g1444 1241 Pfam FHA domain 151 220 IPR000253 GO:0005515
Gso6g1444 1241 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 386 1241 - -
Gso6g1444 1241 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 77 360 - -
Gso6g1444 1241 CDD AAA 975 1108 - -
Gso6g1444 1241 Gene3D - 129 237 - -
Gso6g1444 1241 Pfam AAA+ lid domain 1130 1165 IPR041569 -
Gso6g1444 1241 SMART AAA_5 973 1110 IPR003593 -
Gso6g1444 1241 Pfam ATPase family associated with various cellular activities (AAA) 977 1106 IPR003959 GO:0005524|GO:0016887
Gso6g1444 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 936 1215 IPR027417 -
Gso6g1444 1241 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 77 360 - -
Gso6g1444 1241 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 386 1241 - -
Gso6g1444 1241 SUPERFAMILY SMAD/FHA domain 129 229 IPR008984 GO:0005515
Gso6g1444 1241 MobiDBLite consensus disorder prediction 1 103 - -
Gso6g1444 1241 CDD FHA 130 230 IPR000253 GO:0005515
Gso6g1444 1241 Gene3D - 935 1216 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1444 Gso-Chr6 14374802 14394693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1444 936 1185 Calmodulin-binding Proteins AT3G56690 41.245 2.46e-43 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1444 - - gmx:100778164 2379.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1444 6 14374802 14394693 Gso6g1444 6 14374802 14394693 ECH
Gso4g1646 4 46256053 46278652 Gso6g1444 6 14374802 14394693 GST
Gso5g0394 5 4158253 4176266 Gso6g1444 6 14374802 14394693 PCT
Gso17g1091 17 10372521 10384899 Gso6g1444 6 14374802 14394693 PCT
Gso6g1444 6 14374802 14394693 Gso5g0394 5 4158253 4176266 PCT
Gso6g1444 6 14374802 14394693 Gso17g1091 17 10372521 10384899 PCT