Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1443 ATGGCAGTCACACTCTACGACCTTAGCTCTTCCTCTGGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGGTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGCTCCATCAGATGAATATGGAAATGTTTCCAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATCTCTGGTGTTACTGGCGAGGGATCTGGTGTTATTGTTGAGGGATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAGAGACAGAAGAAGAGAAGAAGGCAGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGACATGAAGAAGCTCGAAGAAGCAGTGAGATCTGTTCAGATGGAAGGGTTGCTTTGGGGTGCATCCAAACTTGTACCTGTTGGGTACGGTATCAAGAAACTGCAAATTATGCTTACTATTGTGGATGACCTAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATAA 693 0.4473 MAVTLYDLSSSSGLKKLDEYLLPRSYITGYQATKDDLTVYAALPTAPSDEYGNVSRWYKHIDALLRISGVTGEGSGVIVEGSLVAEPVATPPAADTKAAVAEDDDDDDVDLFGEETEEEKKAAEERAAAVKASTKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLTVEPINEYVQSCDIVAFNKI* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1443 230 Pfam EF-1 guanine nucleotide exchange domain 143 230 IPR014038 GO:0003746|GO:0006414
Gso6g1443 230 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 219 230 IPR001326 GO:0003746|GO:0005853|GO:0006414
Gso6g1443 230 SUPERFAMILY GST C-terminal domain-like 11 69 IPR036282 -
Gso6g1443 230 SMART EF1_GNE_2 141 230 IPR014038 GO:0003746|GO:0006414
Gso6g1443 230 PANTHER ELONGATION FACTOR 1-DELTA 1-RELATED 1 230 - -
Gso6g1443 230 Gene3D - 134 230 IPR014717 -
Gso6g1443 230 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 105 113 IPR001326 GO:0003746|GO:0005853|GO:0006414
Gso6g1443 230 MobiDBLite consensus disorder prediction 90 109 - -
Gso6g1443 230 CDD EF1B 139 230 IPR014038 GO:0003746|GO:0006414
Gso6g1443 230 Gene3D - 3 74 - -
Gso6g1443 230 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 230 - -
Gso6g1443 230 SUPERFAMILY eEF-1beta-like 138 230 IPR036219 -
Gso6g1443 230 Coils Coil 113 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1443 Gso-Chr6 14367259 14370314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1443 7 230 Eukaryotic Initiation Factors Gene Family AT2G18110 81.416 5.32e-115 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1443 K03232 - gmx:100777627 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1443 6 14367259 14370314 Gso6g1443 6 14367259 14370314 ECH
Gso4g1647 4 46294350 46296815 Gso6g1443 6 14367259 14370314 GST