Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1429 ATGGAGACCAACAACCAGCAACAACAACAACAAGGAGCTCAAGCCCAATCGGGACCCTACCCCGTCGCCGGCGCCGGCGGCAGTGCAGGTGCAGGTGCAGGCGCTCCTCCCCCTTTCCAGCACCTTCTCCAGCAGCAGCAGCAGCAGCTCCAGATGTTCTGGTCTTACCAGCGTCAAGAAATCGAGCACGTGAACGACTTTAAGAATCACCAGCTCCCTCTTGCCCGCATCAAGAAGATCATGAAGGCCGACGAGGATGTCCGCATGATCTCCGCCGAGGCCCCCATCCTCTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACCATCCGCTCCTGGCTCCACGCCGAGGAGAACAAGCGCCGCACCCTCCAGAAGAACGACATCGCCGCCGCCATCACCCGCACCGACATTTTCGACTTCCTCGTTGATATTGTCCCCCGCGACGAGATCAAGGACGACGCTGCTCTTGTGGGGGCCACCGCCAGTGGGGTGCCTTACTACTACCCGCCCATTGGACAGCCTGCCGGGATGATGATTGGCCGCCCCGCCGTCGATCCCGCCACCGGGGTTTATGTCCAGCCGCCCTCCCAGGCATGGCAGTCCGTCTGGCAGTCCGCTGCCGAGGACGCTTCCTATGGCACCGGCCCCGCCGGTGCCCAGCGGAGCCTTGATGGCCAGAGTTGA 690 0.629 METNNQQQQQQGAQAQSGPYPVAGAGGSAGAGAGAPPPFQHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDAALVGATASGVPYYYPPIGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQSAAEDASYGTGPAGAQRSLDGQS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1429 229 SUPERFAMILY Histone-fold 26 143 IPR009072 GO:0046982
Gso6g1429 229 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 228 - -
Gso6g1429 229 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 4 228 - -
Gso6g1429 229 Gene3D Histone, subunit A 38 149 IPR009072 GO:0046982
Gso6g1429 229 MobiDBLite consensus disorder prediction 1 17 - -
Gso6g1429 229 MobiDBLite consensus disorder prediction 1 39 - -
Gso6g1429 229 Pfam Core histone H2A/H2B/H3/H4 58 134 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1429 Gso-Chr6 14242005 14246583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1429 1 228 CCAAT-HAP5 Transcription Factor Family AT3G48590 73.333 2.53e-104 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso6g1429 CBFD_NFYB_HMF 2.4e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1429 - - gmx:100818447 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1656 4 46398324 46402704 Gso6g1429 6 14242005 14246583 GST