Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1422 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGGTGGATCATGTGGATAAGGCAACAACCTTACAACCAAACATAGGAACAAAGGAGGAGCAAAACAGATTTGGAGTTTATAGAATGAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCATCATCATGTGGGGAATTCTGGCACTGAATCAGCACTAGCCAACAAGTCCAAAGATGCTGCTGCTGCTAGTGGTGCTGCTGCTTCTGCAGGAGTTTCCAAAATGGCATCTTCACCTTCAGGGTCTTCTAAGAGAGCTAGAACCATAAGCAGCACATCACTCACAGTGTCATGCCTTGTTGATGGGTGCAATTCAGATCTTAGCAATTGTAGAGATTACCATAGGCGCCATAAGGTGTGTGAACTCCATTCCAAGACCCCAGAGGTCACAATTGCTGGCCTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAAAGAAAAAGAAGCTGCAGAAAACGTTTAGATGGACACAATAGAAGGAGAAGAAAGCCCCAGCCAGAACCTCTCTCGCGACCTGGTAGTTTTTTGTCGAATTACCAAGGCACCCAATTGCTACCCTTCTCAGGTCCACACGTATATGCTTCCACTGCCATGGTTAGCCCAGATTGGAGTGGTGCACTTGTGACTTCCTCTGCAGATGCTAGGTTGCACAACCACAACCACCACCACCACCAACAAGACCTTTTTCTCGGATCTTCTCACAAAGAAGGGAAGCAAGTAGCATTCTTACACAGCAACCATCATCCCTCCACACTCAGCAACCAAAACCCGCCACCTTTCCCATCCCCTTCCATCTGCCACACGCTTCTCAGGACCGGCCCTCTATCAGAAACCTGCGGCGGAGGAGCGAAAAGCAAAATGTTCTGTGAAAGCTTAACAACAACAACAACAACAACAGCAAGTAATAATAATAACAACTCGCTGCATGACACTATTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCAGGAGGGAATGGTTTGAACCAAATGGTACAGCAGCCTCCTCCTCCCTCAATGTCCCTCATGATGCAGCCCTTAGGCCTTAGCTTGCAGGATAATAACAACAACAGCTTAGAGTCTGTGGATCATTGTTCCTCCATGTATAGCTTGGCTTCTGATCATCATGGATCCCACTGCAATGAAGCAGCCCCTCAACTGTTTCCCTTTCAATGGGAATAG 1251 0.47 MDWNLKAPSWDLVDHVDKATTLQPNIGTKEEQNRFGVYRMKGEFSVDLKLGHHHVGNSGTESALANKSKDAAAASGAAASAGVSKMASSPSGSSKRARTISSTSLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIAGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLSRPGSFLSNYQGTQLLPFSGPHVYASTAMVSPDWSGALVTSSADARLHNHNHHHHQQDLFLGSSHKEGKQVAFLHSNHHPSTLSNQNPPPFPSPSICHTLLRTGPLSETCGGGAKSKMFCESLTTTTTTTASNNNNNSLHDTIPCALSLLSSSQTHTPGGNGLNQMVQQPPPPSMSLMMQPLGLSLQDNNNNSLESVDHCSSMYSLASDHHGSHCNEAAPQLFPFQWE* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1422 416 ProSiteProfiles Zinc finger SBP-type profile. 106 183 IPR004333 GO:0003677
Gso6g1422 416 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 23 416 - -
Gso6g1422 416 Pfam SBP domain 109 182 IPR004333 GO:0003677
Gso6g1422 416 Gene3D - 100 170 IPR036893 GO:0003677|GO:0005634
Gso6g1422 416 SUPERFAMILY SBT domain 107 188 IPR036893 GO:0003677|GO:0005634
Gso6g1422 416 MobiDBLite consensus disorder prediction 170 194 - -
Gso6g1422 416 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 416 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1422 Gso-Chr6 14173138 14178298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1422 1 416 SBP-box Gene Family AT5G50670 38.928 1.34e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso6g1422 SBP 5.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1422 - - gmx:102664649 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1664 4 46472236 46477070 Gso6g1422 6 14173138 14178298 GST
Gso5g1735 5 40671273 40675333 Gso6g1422 6 14173138 14178298 PCT
Gso8g0096 8 932625 936126 Gso6g1422 6 14173138 14178298 PCT
Gso6g1422 6 14173138 14178298 Gso5g1735 5 40671273 40675333 PCT
Gso6g1422 6 14173138 14178298 Gso8g0096 8 932625 936126 PCT